org.apache.spark.SparkException: Job aborted due to stage failure: Task serialization failed: org.apache.spark.SparkException: Failed to register classes with Kryo org.apache.spark.serializer.KryoSerializer.newKryo(KryoSerializer.scala:128) org.apache.spark.serializer.KryoSerializerInstance.borrowKryo(KryoSerializer.scala:273) org.apache.spark.serializer.KryoSerializerInstance.<init>(KryoSerializer.scala:258) org.apache.spark.serializer.KryoSerializer.newInstance(KryoSerializer.scala:174) org.apache.spark.broadcast.TorrentBroadcast$.blockifyObject(TorrentBroadcast.scala:201) org.apache.spark.broadcast.TorrentBroadcast.writeBlocks(TorrentBroadcast.scala:102) org.apache.spark.broadcast.TorrentBroadcast.<init>(TorrentBroadcast.scala:85) org.apache.spark.broadcast.TorrentBroadcastFactory.newBroadcast(TorrentBroadcastFactory.scala:34) org.apache.spark.broadcast.BroadcastManager.newBroadcast(BroadcastManager.scala:63) org.apache.spark.SparkContext.broadcast(SparkContext.scala:1326) org.apache.spark.scheduler.DAGScheduler.submitMissingTasks(DAGScheduler.scala:1006) org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$submitStage(DAGScheduler.scala:921) org.apache.spark.scheduler.DAGScheduler.handleJobSubmitted(DAGScheduler.scala:861) org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1607) org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1599) org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1588) org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)

GitHub | tkdagdelen | 9 months ago
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  1. 0

    GitHub comment 23#233436008

    GitHub | 9 months ago | tkdagdelen
    org.apache.spark.SparkException: Job aborted due to stage failure: Task serialization failed: org.apache.spark.SparkException: Failed to register classes with Kryo org.apache.spark.serializer.KryoSerializer.newKryo(KryoSerializer.scala:128) org.apache.spark.serializer.KryoSerializerInstance.borrowKryo(KryoSerializer.scala:273) org.apache.spark.serializer.KryoSerializerInstance.<init>(KryoSerializer.scala:258) org.apache.spark.serializer.KryoSerializer.newInstance(KryoSerializer.scala:174) org.apache.spark.broadcast.TorrentBroadcast$.blockifyObject(TorrentBroadcast.scala:201) org.apache.spark.broadcast.TorrentBroadcast.writeBlocks(TorrentBroadcast.scala:102) org.apache.spark.broadcast.TorrentBroadcast.<init>(TorrentBroadcast.scala:85) org.apache.spark.broadcast.TorrentBroadcastFactory.newBroadcast(TorrentBroadcastFactory.scala:34) org.apache.spark.broadcast.BroadcastManager.newBroadcast(BroadcastManager.scala:63) org.apache.spark.SparkContext.broadcast(SparkContext.scala:1326) org.apache.spark.scheduler.DAGScheduler.submitMissingTasks(DAGScheduler.scala:1006) org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$submitStage(DAGScheduler.scala:921) org.apache.spark.scheduler.DAGScheduler.handleJobSubmitted(DAGScheduler.scala:861) org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1607) org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1599) org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1588) org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
  2. 0

    GitHub comment 23#233437026

    GitHub | 9 months ago | tkdagdelen
    org.apache.spark.SparkException: Job aborted due to stage failure: Task serialization failed: org.apache.spark.SparkException: Failed to register classes with Kryo org.apache.spark.serializer.KryoSerializer.newKryo(KryoSerializer.scala:128) org.apache.spark.serializer.KryoSerializerInstance.borrowKryo(KryoSerializer.scala:273) org.apache.spark.serializer.KryoSerializerInstance.<init>(KryoSerializer.scala:258) org.apache.spark.serializer.KryoSerializer.newInstance(KryoSerializer.scala:174) org.apache.spark.broadcast.TorrentBroadcast$.blockifyObject(TorrentBroadcast.scala:201) org.apache.spark.broadcast.TorrentBroadcast.writeBlocks(TorrentBroadcast.scala:102) org.apache.spark.broadcast.TorrentBroadcast.<init>(TorrentBroadcast.scala:85) org.apache.spark.broadcast.TorrentBroadcastFactory.newBroadcast(TorrentBroadcastFactory.scala:34) org.apache.spark.broadcast.BroadcastManager.newBroadcast(BroadcastManager.scala:63) org.apache.spark.SparkContext.broadcast(SparkContext.scala:1326) org.apache.spark.scheduler.DAGScheduler.submitMissingTasks(DAGScheduler.scala:1006) org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$submitStage(DAGScheduler.scala:921) org.apache.spark.scheduler.DAGScheduler.handleJobSubmitted(DAGScheduler.scala:861) org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1607) org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1599) org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1588) org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
  3. 0

    GitHub comment 23#233078363

    GitHub | 9 months ago | tkdagdelen
    org.apache.spark.SparkException: Job aborted due to stage failure: Task serialization failed: org.apache.spark.SparkException: Failed to register classes with Kryo org.apache.spark.serializer.KryoSerializer.newKryo(KryoSerializer.scala:128) org.apache.spark.serializer.KryoSerializerInstance.borrowKryo(KryoSerializer.scala:273) org.apache.spark.serializer.KryoSerializerInstance.<init>(KryoSerializer.scala:258) org.apache.spark.serializer.KryoSerializer.newInstance(KryoSerializer.scala:174) org.apache.spark.broadcast.TorrentBroadcast$.blockifyObject(TorrentBroadcast.scala:201) org.apache.spark.broadcast.TorrentBroadcast.writeBlocks(TorrentBroadcast.scala:102) org.apache.spark.broadcast.TorrentBroadcast.<init>(TorrentBroadcast.scala:85) org.apache.spark.broadcast.TorrentBroadcastFactory.newBroadcast(TorrentBroadcastFactory.scala:34) org.apache.spark.broadcast.BroadcastManager.newBroadcast(BroadcastManager.scala:63) org.apache.spark.SparkContext.broadcast(SparkContext.scala:1326) org.apache.spark.scheduler.DAGScheduler.submitMissingTasks(DAGScheduler.scala:1006) org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$submitStage(DAGScheduler.scala:921) org.apache.spark.scheduler.DAGScheduler.handleJobSubmitted(DAGScheduler.scala:861) org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1607) org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1599) org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1588) org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
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  5. 0

    KryoSerializer cannot find my SparkKryoRegistrator

    Stack Overflow | 3 months ago | Holger Jaekel
    java.lang.RuntimeException: org.apache.spark.SparkException: Failed to register classes with Kryo
  6. 0
    samebug tip
    This might be an issue with the file location in the Spark submit command. Try it with "spark-submit --master spark://master:7077 hello_world_from_pyspark.py {file location}"

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Root Cause Analysis

  1. java.lang.ClassNotFoundException

    org.bdgenomics.adam.ADAMKryoRegistrator

    at java.net.URLClassLoader.findClass()
  2. Java RT
    Class.forName
    1. java.net.URLClassLoader.findClass(URLClassLoader.java:381)
    2. java.lang.ClassLoader.loadClass(ClassLoader.java:424)
    3. java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    4. java.lang.Class.forName0(Native Method)
    5. java.lang.Class.forName(Class.java:348)
    5 frames
  3. Spark
    KryoSerializer$$anonfun$newKryo$5.apply
    1. org.apache.spark.serializer.KryoSerializer$$anonfun$newKryo$5.apply(KryoSerializer.scala:123)
    2. org.apache.spark.serializer.KryoSerializer$$anonfun$newKryo$5.apply(KryoSerializer.scala:123)
    2 frames
  4. Scala
    Option.map
    1. scala.Option.map(Option.scala:145)
    1 frame
  5. Spark
    EventLoop$$anon$1.run
    1. org.apache.spark.serializer.KryoSerializer.newKryo(KryoSerializer.scala:123)
    2. org.apache.spark.serializer.KryoSerializerInstance.borrowKryo(KryoSerializer.scala:273)
    3. org.apache.spark.serializer.KryoSerializerInstance.<init>(KryoSerializer.scala:258)
    4. org.apache.spark.serializer.KryoSerializer.newInstance(KryoSerializer.scala:174)
    5. org.apache.spark.broadcast.TorrentBroadcast$.blockifyObject(TorrentBroadcast.scala:201)
    6. org.apache.spark.broadcast.TorrentBroadcast.writeBlocks(TorrentBroadcast.scala:102)
    7. org.apache.spark.broadcast.TorrentBroadcast.<init>(TorrentBroadcast.scala:85)
    8. org.apache.spark.broadcast.TorrentBroadcastFactory.newBroadcast(TorrentBroadcastFactory.scala:34)
    9. org.apache.spark.broadcast.BroadcastManager.newBroadcast(BroadcastManager.scala:63)
    10. org.apache.spark.SparkContext.broadcast(SparkContext.scala:1326)
    11. org.apache.spark.scheduler.DAGScheduler.submitMissingTasks(DAGScheduler.scala:1006)
    12. org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$submitStage(DAGScheduler.scala:921)
    13. org.apache.spark.scheduler.DAGScheduler.handleJobSubmitted(DAGScheduler.scala:861)
    14. org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1607)
    15. org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1599)
    16. org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1588)
    17. org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
    17 frames