java.lang.ArrayIndexOutOfBoundsException: 820140

GitHub | jflucier | 10 months ago
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  1. 0

    peptideshaker bug

    GitHub | 10 months ago | jflucier
    java.lang.ArrayIndexOutOfBoundsException: 820140
  2. 0

    Peptide to protein mapping bug in the FM index?

    GitHub | 10 months ago | jflucier
    java.lang.ArrayIndexOutOfBoundsException: 820140

    Root Cause Analysis

    1. java.lang.ArrayIndexOutOfBoundsException

      820140

      at com.compomics.util.experiment.identification.protein_inference.fm_index.Rank.getRank()
    2. com.compomics.util
      SequenceFactory.getDefaultPeptideMapper
      1. com.compomics.util.experiment.identification.protein_inference.fm_index.Rank.getRank(Rank.java:83)
      2. com.compomics.util.experiment.identification.protein_inference.fm_index.WaveletTree.getRankRecursive(WaveletTree.java:327)
      3. com.compomics.util.experiment.identification.protein_inference.fm_index.WaveletTree.getRankRecursive(WaveletTree.java:330)
      4. com.compomics.util.experiment.identification.protein_inference.fm_index.WaveletTree.getRank(WaveletTree.java:305)
      5. com.compomics.util.experiment.identification.protein_inference.fm_index.WaveletTree.createLessTable(WaveletTree.java:289)
      6. com.compomics.util.experiment.identification.protein_inference.fm_index.FMIndex.<init>(FMIndex.java:669)
      7. com.compomics.util.experiment.identification.protein_sequences.SequenceFactory.getDefaultPeptideMapper(SequenceFactory.java:1383)
      8. com.compomics.util.experiment.identification.protein_sequences.SequenceFactory.getDefaultPeptideMapper(SequenceFactory.java:1317)
      8 frames
    3. eu.isas.peptideshaker
      PeptideShakerCLI.main
      1. eu.isas.peptideshaker.fileimport.FileImporter.importSequences(FileImporter.java:213)
      2. eu.isas.peptideshaker.fileimport.FileImporter$IdProcessorFromFile.importFiles(FileImporter.java:450)
      3. eu.isas.peptideshaker.fileimport.FileImporter.importFiles(FileImporter.java:157)
      4. eu.isas.peptideshaker.PeptideShaker.importFiles(PeptideShaker.java:232)
      5. eu.isas.peptideshaker.cmd.PeptideShakerCLI.createProject(PeptideShakerCLI.java:695)
      6. eu.isas.peptideshaker.cmd.PeptideShakerCLI.call(PeptideShakerCLI.java:204)
      7. eu.isas.peptideshaker.cmd.PeptideShakerCLI.main(PeptideShakerCLI.java:907)
      7 frames