java.lang.RuntimeException

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Check if your MongoDB is available.


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  • GitHub comment 1#32553425
    via GitHub by mjafin
    ,
  • GitHub comment 282#243636659
    via GitHub by neekrish
    ,
    • java.lang.RuntimeException: java.net.ConnectException: Connection timed out at ca.mcgill.mcb.pcingola.util.Download.download(Download.java:147) at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEffCmdDownload.downloadAndInstall(SnpEffCmdDownload.java:31) at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEffCmdDownload.runDownloadGenome(SnpEffCmdDownload.java:85) at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEffCmdDownload.run(SnpEffCmdDownload.java:71) at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.run(SnpEff.java:1015) at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.loadDb(SnpEff.java:334) at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:956) at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:939) at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.run(SnpEff.java:978) at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.main(SnpEff.java:136) Caused by: java.net.ConnectException: Connection timed out at java.net.PlainSocketImpl.socketConnect(Native Method) at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) at java.net.Socket.connect(Socket.java:589) at java.net.Socket.connect(Socket.java:538) at sun.net.NetworkClient.doConnect(NetworkClient.java:180) at sun.net.www.http.HttpClient.openServer(HttpClient.java:432) at sun.net.www.http.HttpClient.openServer(HttpClient.java:527) at sun.net.www.http.HttpClient.<init>(HttpClient.java:211) at sun.net.www.http.HttpClient.New(HttpClient.java:308) at sun.net.www.http.HttpClient.New(HttpClient.java:326) at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1169) at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1105) at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:999) at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:933) at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1513) at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1441) at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480) at ca.mcgill.mcb.pcingola.util.Download.download(Download.java:86) ... 9 more

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