java.lang.RuntimeException: Genome download failed!

GitHub | dalloliogm | 5 months ago
  1. 0

    no http proxy support for download

    GitHub | 5 months ago | dalloliogm
    java.lang.RuntimeException: Genome download failed!
  2. 0

    Misleading error: Should be "Cannot create directory"

    GitHub | 2 years ago | pcingola
    java.lang.RuntimeException: Genome download failed!
  3. 0

    GitHub comment 47#61619854

    GitHub | 2 years ago | Kisun
    java.lang.RuntimeException: Genome download failed!
  4. Speed up your debug routine!

    Automated exception search integrated into your IDE

  5. 0

    VarScan + snpEff issue

    GitHub | 3 years ago | mjafin
    java.lang.RuntimeException: Cannot read config file! Config file name : 'snpEff.config' Full path : '/ngs/oncology/analysis/external/icgc/dream/chr19_test/tumor-paired/work/snpEff.config' Config file name : '/apps/bcbio-nextgen/latest-devel/rhel6-x64/Cellar/snpeff/3.6c/libexec/snpEff.config' Full path : '/apps/bcbio-nextgen/latest-devel/rhel6-x64/Cellar/snpeff/3.6c/libexec/snpEff.config'
  6. 0

    Gene names containing spacer cause problems

    GitHub | 2 years ago | pcingola
    java.lang.RuntimeException: No white-space, semi-colons, or equals-signs are permitted in INFO field. Name:"LOF" Value:"(ILDR2 (2 of 2)|ENSDARG00000096600|1|1.00)"

    Not finding the right solution?
    Take a tour to get the most out of Samebug.

    Tired of useless tips?

    Automated exception search integrated into your IDE

    Root Cause Analysis

    1. java.lang.RuntimeException

      Genome download failed!

      at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.loadDb()
    2. ca.mcgill.mcb
      SnpEff.main
      1. ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.loadDb(SnpEff.java:335)
      2. ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:956)
      3. ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:939)
      4. ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.run(SnpEff.java:978)
      5. ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.main(SnpEff.java:136)
      5 frames