java.lang.RuntimeException: Genome download failed!

GitHub | dalloliogm | 8 months ago
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  1. 0

    no http proxy support for download

    GitHub | 8 months ago | dalloliogm
    java.lang.RuntimeException: Genome download failed!
  2. 0

    Misleading error: Should be "Cannot create directory"

    GitHub | 2 years ago | pcingola
    java.lang.RuntimeException: Genome download failed!
  3. 0

    GitHub comment 47#61619854

    GitHub | 2 years ago | Kisun
    java.lang.RuntimeException: Genome download failed!
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  5. 0

    VarScan + snpEff issue

    GitHub | 3 years ago | mjafin
    java.lang.RuntimeException: Cannot read config file! Config file name : 'snpEff.config' Full path : '/ngs/oncology/analysis/external/icgc/dream/chr19_test/tumor-paired/work/snpEff.config' Config file name : '/apps/bcbio-nextgen/latest-devel/rhel6-x64/Cellar/snpeff/3.6c/libexec/snpEff.config' Full path : '/apps/bcbio-nextgen/latest-devel/rhel6-x64/Cellar/snpeff/3.6c/libexec/snpEff.config'
  6. 0

    Gene names containing spacer cause problems

    GitHub | 3 years ago | pcingola
    java.lang.RuntimeException: No white-space, semi-colons, or equals-signs are permitted in INFO field. Name:"LOF" Value:"(ILDR2 (2 of 2)|ENSDARG00000096600|1|1.00)"

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    Root Cause Analysis

    1. java.lang.RuntimeException

      Genome download failed!

      at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.loadDb()
    2. ca.mcgill.mcb
      1. ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.loadDb(
      5. ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.main(
      5 frames