java.lang.IllegalStateException

Key ADP found in VariantContext field INFO at chr1:3300162 but this key isn't defined in the VCFHeader. We require all VCFs to have complete VCF headers by default.

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Solutions on the web26896

  • via GitHub by hyong2000
    , 1 year ago
    Key ADP found in VariantContext field INFO at chr1:3300162 but this key isn't defined in the VCFHeader. We require all VCFs to have complete VCF headers by default.
  • Key found in VariantContext field INFO at chr1:786343 but this key isn't defined in the VCFHeader. We require all VCFs to have complete VCF headers by default.
  • Key found in VariantContext field INFO at 1:949696 but this key isn't defined in the VCFHeader. We require all VCFs to have complete VCF headers by default.
  • Stack trace

    • java.lang.IllegalStateException: Key ADP found in VariantContext field INFO at chr1:3300162 but this key isn't defined in the VCFHeader. We require all VCFs to have complete VCF headers by default. at htsjdk.variant.vcf.VCFEncoder.fieldIsMissingFromHeaderError(VCFEncoder.java:177) at htsjdk.variant.vcf.VCFEncoder.encode(VCFEncoder.java:115) at htsjdk.variant.variantcontext.writer.VCFWriter.add(VCFWriter.java:222) at org.broadinstitute.gatk.tools.CatVariants.execute(CatVariants.java:296) at org.broadinstitute.gatk.utils.commandline.CommandLineProgram.start(CommandLineProgram.java:248) at org.broadinstitute.gatk.utils.commandline.CommandLineProgram.start(CommandLineProgram.java:155) at org.broadinstitute.gatk.tools.CatVariants.main(CatVariants.java:312)

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