java.nio.channels.ClosedChannelException

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  • HDFS Closed Channel
    via by Roshan Punnoose,
  • oozie java action issue
    via by Immanuel Fredrick,
  • scala on stackoverflow | Scala Class
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  • Noticed this in testing 1.7.0 on my laptop tonight. Started two tservers, one continuous ingest client and would kill/restart one of the tservers occasionally. {noformat} Failed to close map file java.io.IOException: Filesystem closed at org.apache.hadoop.hdfs.DFSClient.checkOpen(DFSClient.java:795) at org.apache.hadoop.hdfs.DFSInputStream.close(DFSInputStream.java:629) at java.io.FilterInputStream.close(FilterInputStream.java:181) at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$Reader.close(CachableBlockFile.java:409) at org.apache.accumulo.core.file.rfile.RFile$Reader.close(RFile.java:921) at org.apache.accumulo.tserver.tablet.Compactor.compactLocalityGroup(Compactor.java:391) at org.apache.accumulo.tserver.tablet.Compactor.call(Compactor.java:214) at org.apache.accumulo.tserver.tablet.Tablet._majorCompact(Tablet.java:1981) at org.apache.accumulo.tserver.tablet.Tablet.majorCompact(Tablet.java:2098) at org.apache.accumulo.tserver.tablet.CompactionRunner.run(CompactionRunner.java:44) at org.apache.htrace.wrappers.TraceRunnable.run(TraceRunnable.java:57) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35) at java.lang.Thread.run(Thread.java:745) null java.nio.channels.ClosedChannelException at org.apache.hadoop.hdfs.DFSOutputStream.checkClosed(DFSOutputStream.java:1622) at org.apache.hadoop.fs.FSOutputSummer.write(FSOutputSummer.java:104) at org.apache.hadoop.fs.FSDataOutputStream$PositionCache.write(FSDataOutputStream.java:58) at java.io.DataOutputStream.write(DataOutputStream.java:107) at org.apache.accumulo.core.file.rfile.bcfile.SimpleBufferedOutputStream.flushBuffer(SimpleBufferedOutputStream.java:39) at org.apache.accumulo.core.file.rfile.bcfile.SimpleBufferedOutputStream.flush(SimpleBufferedOutputStream.java:68) at org.apache.hadoop.io.compress.CompressionOutputStream.flush(CompressionOutputStream.java:69) at org.apache.accumulo.core.file.rfile.bcfile.Compression$FinishOnFlushCompressionStream.flush(Compression.java:66) at java.io.BufferedOutputStream.flush(BufferedOutputStream.java:141) at org.apache.accumulo.core.file.rfile.bcfile.BCFile$Writer$WBlockState.finish(BCFile.java:233) at org.apache.accumulo.core.file.rfile.bcfile.BCFile$Writer$BlockAppender.close(BCFile.java:320) at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$BlockWrite.close(CachableBlockFile.java:121) at org.apache.accumulo.core.file.rfile.RFile$Writer.closeBlock(RFile.java:398) at org.apache.accumulo.core.file.rfile.RFile$Writer.append(RFile.java:382) at org.apache.accumulo.tserver.tablet.Compactor.compactLocalityGroup(Compactor.java:356) at org.apache.accumulo.tserver.tablet.Compactor.call(Compactor.java:214) at org.apache.accumulo.tserver.tablet.Tablet._majorCompact(Tablet.java:1981) at org.apache.accumulo.tserver.tablet.Tablet.majorCompact(Tablet.java:2098) at org.apache.accumulo.tserver.tablet.CompactionRunner.run(CompactionRunner.java:44) at org.apache.htrace.wrappers.TraceRunnable.run(TraceRunnable.java:57) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35) at java.lang.Thread.run(Thread.java:745) Filesystem closed java.io.IOException: Filesystem closed at org.apache.hadoop.hdfs.DFSClient.checkOpen(DFSClient.java:795) at org.apache.hadoop.hdfs.DFSClient.delete(DFSClient.java:1927) at org.apache.hadoop.hdfs.DistributedFileSystem$12.doCall(DistributedFileSystem.java:638) at org.apache.hadoop.hdfs.DistributedFileSystem$12.doCall(DistributedFileSystem.java:634) at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81) at org.apache.hadoop.hdfs.DistributedFileSystem.delete(DistributedFileSystem.java:634) at org.apache.accumulo.server.fs.VolumeManagerImpl.deleteRecursively(VolumeManagerImpl.java:193) at org.apache.accumulo.tserver.tablet.Compactor.call(Compactor.java:255) at org.apache.accumulo.tserver.tablet.Tablet._majorCompact(Tablet.java:1981) at org.apache.accumulo.tserver.tablet.Tablet.majorCompact(Tablet.java:2098) at org.apache.accumulo.tserver.tablet.CompactionRunner.run(CompactionRunner.java:44) at org.apache.htrace.wrappers.TraceRunnable.run(TraceRunnable.java:57) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35) at java.lang.Thread.run(Thread.java:745) MinC failed (null) to create hdfs://localhost:8020/accumulo17/tables/2/t-0000011/F00000yd.rf_tmp retrying ... MajC Failed, extent = 2;5;45 java.io.IOException: Filesystem closed at org.apache.hadoop.hdfs.DFSClient.checkOpen(DFSClient.java:795) at org.apache.hadoop.hdfs.DFSClient.create(DFSClient.java:1651) at org.apache.hadoop.hdfs.DFSClient.create(DFSClient.java:1593) at org.apache.hadoop.hdfs.DistributedFileSystem$6.doCall(DistributedFileSystem.java:397) at org.apache.hadoop.hdfs.DistributedFileSystem$6.doCall(DistributedFileSystem.java:393) at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81) at org.apache.hadoop.hdfs.DistributedFileSystem.create(DistributedFileSystem.java:393) at org.apache.hadoop.hdfs.DistributedFileSystem.create(DistributedFileSystem.java:337) at org.apache.hadoop.fs.FileSystem.create(FileSystem.java:908) at org.apache.hadoop.fs.FileSystem.create(FileSystem.java:889) at org.apache.accumulo.core.file.rfile.RFileOperations.openWriter(RFileOperations.java:126) at org.apache.accumulo.core.file.rfile.RFileOperations.openWriter(RFileOperations.java:106) at org.apache.accumulo.core.file.DispatchingFileFactory.openWriter(DispatchingFileFactory.java:78) at org.apache.accumulo.tserver.tablet.Compactor.call(Compactor.java:192) at org.apache.accumulo.tserver.tablet.Tablet._majorCompact(Tablet.java:1981) at org.apache.accumulo.tserver.tablet.Tablet.majorCompact(Tablet.java:2098) at org.apache.accumulo.tserver.tablet.CompactionRunner.run(CompactionRunner.java:44) at org.apache.htrace.wrappers.TraceRunnable.run(TraceRunnable.java:57) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35) at java.lang.Thread.run(Thread.java:745) MajC Failed, extent = 2;45;4 java.io.IOException: Filesystem closed at org.apache.hadoop.hdfs.DFSClient.checkOpen(DFSClient.java:795) at org.apache.hadoop.hdfs.DFSClient.create(DFSClient.java:1651) at org.apache.hadoop.hdfs.DFSClient.create(DFSClient.java:1593) at org.apache.hadoop.hdfs.DistributedFileSystem$6.doCall(DistributedFileSystem.java:397) at org.apache.hadoop.hdfs.DistributedFileSystem$6.doCall(DistributedFileSystem.java:393) at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81) at org.apache.hadoop.hdfs.DistributedFileSystem.create(DistributedFileSystem.java:393) at org.apache.hadoop.hdfs.DistributedFileSystem.create(DistributedFileSystem.java:337) at org.apache.hadoop.fs.FileSystem.create(FileSystem.java:908) at org.apache.hadoop.fs.FileSystem.create(FileSystem.java:889) at org.apache.accumulo.core.file.rfile.RFileOperations.openWriter(RFileOperations.java:126) at org.apache.accumulo.core.file.rfile.RFileOperations.openWriter(RFileOperations.java:106) at org.apache.accumulo.core.file.DispatchingFileFactory.openWriter(DispatchingFileFactory.java:78) at org.apache.accumulo.tserver.tablet.Compactor.call(Compactor.java:192) at org.apache.accumulo.tserver.tablet.Tablet._majorCompact(Tablet.java:1981) at org.apache.accumulo.tserver.tablet.Tablet.majorCompact(Tablet.java:2098) at org.apache.accumulo.tserver.tablet.CompactionRunner.run(CompactionRunner.java:44) at org.apache.htrace.wrappers.TraceRunnable.run(TraceRunnable.java:57) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35) at java.lang.Thread.run(Thread.java:745) MajC Failed, extent = 2;35;3 java.io.IOException: Filesystem closed at org.apache.hadoop.hdfs.DFSClient.checkOpen(DFSClient.java:795) at org.apache.hadoop.hdfs.DFSClient.create(DFSClient.java:1651) at org.apache.hadoop.hdfs.DFSClient.create(DFSClient.java:1593) at org.apache.hadoop.hdfs.DistributedFileSystem$6.doCall(DistributedFileSystem.java:397) at org.apache.hadoop.hdfs.DistributedFileSystem$6.doCall(DistributedFileSystem.java:393) at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81) at org.apache.hadoop.hdfs.DistributedFileSystem.create(DistributedFileSystem.java:393) at org.apache.hadoop.hdfs.DistributedFileSystem.create(DistributedFileSystem.java:337) at org.apache.hadoop.fs.FileSystem.create(FileSystem.java:908) at org.apache.hadoop.fs.FileSystem.create(FileSystem.java:889) at org.apache.accumulo.core.file.rfile.RFileOperations.openWriter(RFileOperations.java:126) at org.apache.accumulo.core.file.rfile.RFileOperations.openWriter(RFileOperations.java:106) at org.apache.accumulo.core.file.DispatchingFileFactory.openWriter(DispatchingFileFactory.java:78) at org.apache.accumulo.tserver.tablet.Compactor.call(Compactor.java:192) at org.apache.accumulo.tserver.tablet.Tablet._majorCompact(Tablet.java:1981) at org.apache.accumulo.tserver.tablet.Tablet.majorCompact(Tablet.java:2098) at org.apache.accumulo.tserver.tablet.CompactionRunner.run(CompactionRunner.java:44) at org.apache.htrace.wrappers.TraceRunnable.run(TraceRunnable.java:57) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35) at java.lang.Thread.run(Thread.java:745) Filesystem closed java.io.IOException: Filesystem closed at org.apache.hadoop.hdfs.DFSClient.checkOpen(DFSClient.java:795) at org.apache.hadoop.hdfs.DFSClient.create(DFSClient.java:1651) at org.apache.hadoop.hdfs.DFSClient.create(DFSClient.java:1593) at org.apache.hadoop.hdfs.DistributedFileSystem$6.doCall(DistributedFileSystem.java:397) at org.apache.hadoop.hdfs.DistributedFileSystem$6.doCall(DistributedFileSystem.java:393) at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81) at org.apache.hadoop.hdfs.DistributedFileSystem.create(DistributedFileSystem.java:393) at org.apache.hadoop.hdfs.DistributedFileSystem.create(DistributedFileSystem.java:337) at org.apache.hadoop.fs.FileSystem.create(FileSystem.java:908) at org.apache.hadoop.fs.FileSystem.create(FileSystem.java:889) at org.apache.accumulo.core.file.rfile.RFileOperations.openWriter(RFileOperations.java:126) at org.apache.accumulo.core.file.rfile.RFileOperations.openWriter(RFileOperations.java:106) at org.apache.accumulo.core.file.DispatchingFileFactory.openWriter(DispatchingFileFactory.java:78) at org.apache.accumulo.tserver.tablet.Compactor.call(Compactor.java:192) at org.apache.accumulo.tserver.tablet.Tablet._majorCompact(Tablet.java:1981) at org.apache.accumulo.tserver.tablet.Tablet.majorCompact(Tablet.java:2098) at org.apache.accumulo.tserver.tablet.CompactionRunner.run(CompactionRunner.java:44) at org.apache.htrace.wrappers.TraceRunnable.run(TraceRunnable.java:57) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35) at java.lang.Thread.run(Thread.java:745) {noformat} This reminded me of something that [~bills] ran into and tried to get to the bottom of. My hunch was that somethign registered a shutdown hook which closed the filesystem object. I also remembered that FileSystem instances are cached. Bill pointed out that he thought this might still be a VFS related issue (despite having nothign to do with VFS). After I noticed a shutdown hook in our VFS usage, I think it's unsafe to be sharing FileSystem instances with VFS code that might also be used by Accumulo for important things like writing to files. We should get a unique FileSystem instance to provide to any VFS code. We can do this by: # Setting {{fs.hdfs.impl.disable.cache}} in the Hadoop Configuration we provide to {{FileSystem.get(Configuration)}} # Call {{FileSystem.newInstance(URI, Configuration)}}. Either seem to do what we want -- the latter possibly having more reliable semantics than just a configuration value.
    via by Josh Elser,
  • oozie java action issue
    via by Immanuel Fredrick,
  • oozie java action issue
    via by Immanuel Fredrick,
    • java.nio.channels.ClosedChannelException at org.apache.hadoop.hdfs.DFSOutputStream.checkClosed(DFSOutputStream.java:1320) at org.apache.hadoop.fs.FSOutputSummer.write(FSOutputSummer.java:98) at org.apache.hadoop.fs.FSDataOutputStream$PositionCache.write(FSDataOutputStream.java:59) at java.io.DataOutputStream.writeLong(DataOutputStream.java:224) at org.apache.accumulo.server.logger.LogFileKey.write(LogFileKey.java:108) at org.apache.accumulo.server.tabletserver.log.DfsLogger.write(DfsLogger.java:435) at org.apache.accumulo.server.tabletserver.log.DfsLogger.logFileData(DfsLogger.java:448) at org.apache.accumulo.server.tabletserver.log.DfsLogger.logManyTablets(DfsLogger.java:479) at org.apache.accumulo.server.tabletserver.log.DfsLogger.log(DfsLogger.java:440) at org.apache.accumulo.server.tabletserver.log.TabletServerLogger$5.write(TabletServerLogger.java:345) at org.apache.accumulo.server.tabletserver.log.TabletServerLogger.write(TabletServerLogger.java:273) at org.apache.accumulo.server.tabletserver.log.TabletServerLogger.write(TabletServerLogger.java:229) at org.apache.accumulo.server.tabletserver.log.TabletServerLogger.log(TabletServerLogger.java:342) at org.apache.accumulo.server.tabletserver.TabletServer$ThriftClientHandler.update(TabletServer.java:1680) at sun.reflect.GeneratedMethodAccessor7.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.accumulo.trace.instrument.thrift.TraceWrap$1.invoke(TraceWrap.java:63) at com.sun.proxy.$Proxy11.update(Unknown Source) at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$update.getResult(TabletClientService.java:2125) at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$update.getResult(TabletClientService.java:2109) at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39) at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39) at org.apache.accumulo.server.util.TServerUtils$TimedProcessor.process(TServerUtils.java:155) at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:478) at org.apache.accumulo.server.util.TServerUtils$THsHaServer$Invocation.run(TServerUtils.java:207) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at org.apache.accumulo.trace.instrument.TraceRunnable.run(TraceRunnable.java:47) at org.apache.accumulo.core.util.LoggingRunnable.run(LoggingRunnable.java:34) at java.lang.Thread.run(Thread.java:744)

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