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via sourceforge.net by Unknown author, 1 year ago
Premature end of file
via GitHub by royfrancis
, 1 year ago
Premature end of file
net.sf.samtools.FileTruncatedException: 
Premature end of file	at net.sf.samtools.util.BlockCompressedInputStream.readBlock(BlockCompressedInputStream.java:290)	at net.sf.samtools.util.BlockCompressedInputStream.available(BlockCompressedInputStream.java:100)	at net.sf.samtools.util.BlockCompressedInputStream.read(BlockCompressedInputStream.java:169)	at java.io.DataInputStream.read(DataInputStream.java:132)	at net.sf.samtools.util.BinaryCodec.readBytesOrFewer(BinaryCodec.java:394)	at net.sf.samtools.util.BinaryCodec.readBytes(BinaryCodec.java:371)	at net.sf.samtools.util.BinaryCodec.readBytes(BinaryCodec.java:357)	at net.sf.samtools.BAMRecordCodec.decode(BAMRecordCodec.java:182)	at net.sf.samtools.BAMFileReader$BAMFileIterator.getNextRecord(BAMFileReader.java:397)	at net.sf.samtools.BAMFileReader$BAMFileIterator.advance(BAMFileReader.java:373)	at net.sf.samtools.BAMFileReader$BAMFileIterator.next(BAMFileReader.java:363)	at net.sf.samtools.BAMFileReader$BAMFileIterator.next(BAMFileReader.java:330)	at net.sf.picard.sam.MarkDuplicates.buildSortedReadEndLists(MarkDuplicates.java:261)	at net.sf.picard.sam.MarkDuplicates.doWork(MarkDuplicates.java:112)	at net.sf.picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:150)	at net.sf.picard.sam.MarkDuplicates.main(MarkDuplicates.java:96)