net.sf.samtools.util.RuntimeIOException

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  • Stack trace

    • net.sf.samtools.util.RuntimeIOException: File not found: at net.sf.samtools.util.BinaryCodec.<init>(BinaryCodec.java:102) at net.sf.samtools.util.BlockCompressedOutputStream.<init>(BlockCompressedOutputStream.java:127) at net.sf.samtools.BAMFileWriter.<init>(BAMFileWriter.java:50) at net.sf.samtools.SAMFileWriterFactory.makeBAMWriter(SAMFileWriterFactory.java:154) at net.sf.samtools.SAMFileWriterFactory.makeBAMWriter(SAMFileWriterFactory.java:136) at net.sf.samtools.SAMFileWriterFactory.makeSAMOrBAMWriter(SAMFileWriterFactory.java:246) at net.sf.picard.sam.ReorderSam.doWork(ReorderSam.java:118) at net.sf.picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:179) at net.sf.picard.cmdline.CommandLineProgram.instanceMainWithExit(CommandLineProgram.java:120) at net.sf.picard.sam.ReorderSam.main(ReorderSam.java:77) Caused by: java.io.FileNotFoundException: (No such file or directory) at java.io.FileOutputStream.open(Native Method) at java.io.FileOutputStream.<init>(FileOutputStream.java:221) at java.io.FileOutputStream.<init>(FileOutputStream.java:171) at net.sf.samtools.util.BinaryCodec.<init>(BinaryCodec.java:95) ... 9 more

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