net.sf.samtools.util.RuntimeIOException: File not found:

Unix & Linux | biorunner88 | 1 year ago
tip
Do you know that we can give you better hits? Get more relevant results from Samebug’s stack trace search.
  1. 0

    Program just works in one terminal

    Stack Overflow | 1 year ago | biorunner88
    net.sf.samtools.util.RuntimeIOException: File not found:
  2. 0

    Program just works in one terminal

    Unix & Linux | 1 year ago | biorunner88
    net.sf.samtools.util.RuntimeIOException: File not found:
  3. 0

    Trying to Run CAP Example with standalone configuration

    Google Groups | 3 years ago | nitin tonk
    java.io.FileNotFoundException: (No such file or directory)
  4. Speed up your debug routine!

    Automated exception search integrated into your IDE

  5. 0

    GitHub comment 30#3016563

    GitHub | 5 years ago | jburel
    java.io.FileNotFoundException: (No such file or directory)

  1. rsprangemeijer 1 times, last 1 week ago
  2. Casper 1 times, last 3 weeks ago
  3. QrCeric 216 times, last 2 weeks ago
  4. Axelo 1 times, last 1 month ago
  5. tyson925 2 times, last 1 month ago
34 more registered users
61 unregistered visitors
Not finding the right solution?
Take a tour to get the most out of Samebug.

Tired of useless tips?

Automated exception search integrated into your IDE

Root Cause Analysis

  1. java.io.FileNotFoundException

    (No such file or directory)

    at java.io.FileOutputStream.open()
  2. Java RT
    FileOutputStream.<init>
    1. java.io.FileOutputStream.open(Native Method)
    2. java.io.FileOutputStream.<init>(FileOutputStream.java:221)
    3. java.io.FileOutputStream.<init>(FileOutputStream.java:171)
    3 frames
  3. picard
    ReorderSam.main
    1. net.sf.samtools.util.BinaryCodec.<init>(BinaryCodec.java:95)
    2. net.sf.samtools.util.BlockCompressedOutputStream.<init>(BlockCompressedOutputStream.java:127)
    3. net.sf.samtools.BAMFileWriter.<init>(BAMFileWriter.java:50)
    4. net.sf.samtools.SAMFileWriterFactory.makeBAMWriter(SAMFileWriterFactory.java:154)
    5. net.sf.samtools.SAMFileWriterFactory.makeBAMWriter(SAMFileWriterFactory.java:136)
    6. net.sf.samtools.SAMFileWriterFactory.makeSAMOrBAMWriter(SAMFileWriterFactory.java:246)
    7. net.sf.picard.sam.ReorderSam.doWork(ReorderSam.java:118)
    8. net.sf.picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:179)
    9. net.sf.picard.cmdline.CommandLineProgram.instanceMainWithExit(CommandLineProgram.java:120)
    10. net.sf.picard.sam.ReorderSam.main(ReorderSam.java:77)
    10 frames