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via Stack Overflow by biorunner88
, 2 years ago
via Unix & Linux by biorunner88
, 1 year ago
java.io.FileNotFoundException:  (No such file or directory)	at java.io.FileOutputStream.open(Native Method)	at java.io.FileOutputStream.(FileOutputStream.java:221)	at java.io.FileOutputStream.(FileOutputStream.java:171)	at net.sf.samtools.util.BinaryCodec.(BinaryCodec.java:95)	at net.sf.samtools.util.BlockCompressedOutputStream.(BlockCompressedOutputStream.java:127)	at net.sf.samtools.BAMFileWriter.(BAMFileWriter.java:50)	at net.sf.samtools.SAMFileWriterFactory.makeBAMWriter(SAMFileWriterFactory.java:154)	at net.sf.samtools.SAMFileWriterFactory.makeBAMWriter(SAMFileWriterFactory.java:136)	at net.sf.samtools.SAMFileWriterFactory.makeSAMOrBAMWriter(SAMFileWriterFactory.java:246)	at net.sf.picard.sam.ReorderSam.doWork(ReorderSam.java:118)	at net.sf.picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:179)	at net.sf.picard.cmdline.CommandLineProgram.instanceMainWithExit(CommandLineProgram.java:120)	at net.sf.picard.sam.ReorderSam.main(ReorderSam.java:77)