net.sf.samtools.util.RuntimeIOException: File not found:

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via Stack Overflow by biorunner88
, 1 year ago
via Unix & Linux by biorunner88
, 1 year ago
java.io.FileNotFoundException: (No such file or directory)
at java.io.FileOutputStream.open(Native Method)
at java.io.FileOutputStream.(FileOutputStream.java:221)
at java.io.FileOutputStream.(FileOutputStream.java:171)
at net.sf.samtools.util.BinaryCodec.(BinaryCodec.java:95)
at net.sf.samtools.util.BlockCompressedOutputStream.(BlockCompressedOutputStream.java:127)
at net.sf.samtools.BAMFileWriter.(BAMFileWriter.java:50)
at net.sf.samtools.SAMFileWriterFactory.makeBAMWriter(SAMFileWriterFactory.java:154)
at net.sf.samtools.SAMFileWriterFactory.makeBAMWriter(SAMFileWriterFactory.java:136)
at net.sf.samtools.SAMFileWriterFactory.makeSAMOrBAMWriter(SAMFileWriterFactory.java:246)
at net.sf.picard.sam.ReorderSam.doWork(ReorderSam.java:118)
at net.sf.picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:179)
at net.sf.picard.cmdline.CommandLineProgram.instanceMainWithExit(CommandLineProgram.java:120)
at net.sf.picard.sam.ReorderSam.main(ReorderSam.java:77)

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