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Samebug tips

  1. ,
    Expert tip

    A few things cause this exception:
    1) Check if you have all jars and if they're in the correct path.
    2) Your classpath might be broken, you can define it in the command line with java -cp yourClassPath or at your IDE if you're using one.

  2. ,

    you can change your scala version to 2.11.11

java.lang.ClassNotFoundException: org.xerial.snappy.LoadSnappy	at	at java.lang.ClassLoader.loadClass(	at sun.misc.Launcher$AppClassLoader.loadClass(	at java.lang.ClassLoader.loadClass(	at htsjdk.samtools.util.SnappyLoader.(	at htsjdk.samtools.util.SnappyLoader.(	at htsjdk.samtools.util.TempStreamFactory.getSnappyLoader(	at htsjdk.samtools.util.TempStreamFactory.wrapTempOutputStream(	at htsjdk.samtools.util.SortingCollection.spillToDisk(	at htsjdk.samtools.util.SortingCollection.add(	at htsjdk.samtools.SAMFileWriterImpl.addAlignment(	at htsjdk.samtools.AsyncSAMFileWriter.synchronouslyWrite(	at htsjdk.samtools.AsyncSAMFileWriter.synchronouslyWrite(	at htsjdk.samtools.util.AbstractAsyncWriter$	at