java.lang.NoClassDefFoundError: org/xerial/snappy/LoadSnappy

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Root Cause Analysis

  1. java.lang.ClassNotFoundException

    org.xerial.snappy.LoadSnappy

    at java.net.URLClassLoader.findClass()
  2. Java RT
    ClassLoader.loadClass
    1. java.net.URLClassLoader.findClass(URLClassLoader.java:381)
    2. java.lang.ClassLoader.loadClass(ClassLoader.java:424)
    3. sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
    4. java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    4 frames
  3. HTS JDK
    AbstractAsyncWriter$WriterRunnable.run
    1. htsjdk.samtools.util.SnappyLoader.<init>(SnappyLoader.java:86)
    2. htsjdk.samtools.util.SnappyLoader.<init>(SnappyLoader.java:52)
    3. htsjdk.samtools.util.TempStreamFactory.getSnappyLoader(TempStreamFactory.java:42)
    4. htsjdk.samtools.util.TempStreamFactory.wrapTempOutputStream(TempStreamFactory.java:74)
    5. htsjdk.samtools.util.SortingCollection.spillToDisk(SortingCollection.java:223)
    6. htsjdk.samtools.util.SortingCollection.add(SortingCollection.java:166)
    7. htsjdk.samtools.SAMFileWriterImpl.addAlignment(SAMFileWriterImpl.java:192)
    8. htsjdk.samtools.AsyncSAMFileWriter.synchronouslyWrite(AsyncSAMFileWriter.java:36)
    9. htsjdk.samtools.AsyncSAMFileWriter.synchronouslyWrite(AsyncSAMFileWriter.java:16)
    10. htsjdk.samtools.util.AbstractAsyncWriter$WriterRunnable.run(AbstractAsyncWriter.java:117)
    10 frames
  4. Java RT
    Thread.run
    1. java.lang.Thread.run(Thread.java:745)
    1 frame