java.lang.NoClassDefFoundError: org/xerial/snappy/LoadSnappy

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Samebug tips

  1. ,
    Expert tip

    A few things cause this exception:
    1) Check if you have all jars and if they're in the correct path.
    2) Your classpath might be broken, you can define it in the command line with java -cp yourClassPath or at your IDE if you're using one.

  2. ,

    you can change your scala version to 2.11.11

java.lang.NoClassDefFoundError: org/xerial/snappy/LoadSnappy	at htsjdk.samtools.util.SnappyLoader.<init>(SnappyLoader.java:86)	at htsjdk.samtools.util.SnappyLoader.<init>(SnappyLoader.java:52)	at htsjdk.samtools.util.TempStreamFactory.getSnappyLoader(TempStreamFactory.java:42)	at htsjdk.samtools.util.TempStreamFactory.wrapTempOutputStream(TempStreamFactory.java:74)	at htsjdk.samtools.util.SortingCollection.spillToDisk(SortingCollection.java:223)	at htsjdk.samtools.util.SortingCollection.add(SortingCollection.java:166)	at htsjdk.samtools.SAMFileWriterImpl.addAlignment(SAMFileWriterImpl.java:192)	at htsjdk.samtools.AsyncSAMFileWriter.synchronouslyWrite(AsyncSAMFileWriter.java:36)	at htsjdk.samtools.AsyncSAMFileWriter.synchronouslyWrite(AsyncSAMFileWriter.java:16)	at htsjdk.samtools.util.AbstractAsyncWriter$WriterRunnable.run(AbstractAsyncWriter.java:117)	at java.lang.Thread.run(Thread.java:745)Caused by: java.lang.ClassNotFoundException: org.xerial.snappy.LoadSnappy	at java.net.URLClassLoader.findClass(URLClassLoader.java:381)	at java.lang.ClassLoader.loadClass(ClassLoader.java:424)	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)	at java.lang.ClassLoader.loadClass(ClassLoader.java:357)	... 11 more