java.lang.NoClassDefFoundError: org/xerial/snappy/LoadSnappy
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- Expert tip
A few things cause this exception:
1) Check if you have all jars and if they're in the correct path.
2) Your classpath might be broken, you can define it in the command line withjava -cp yourClassPath
or at your IDE if you're using one. you can change your scala version to 2.11.11
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, 1 year agojava.lang.ClassNotFoundException: org.xerial.snappy.LoadSnappy
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at htsjdk.samtools.util.SnappyLoader.
(SnappyLoader.java:86) at htsjdk.samtools.util.SnappyLoader.
(SnappyLoader.java:52) at htsjdk.samtools.util.TempStreamFactory.getSnappyLoader(TempStreamFactory.java:42)
at htsjdk.samtools.util.TempStreamFactory.wrapTempOutputStream(TempStreamFactory.java:74)
at htsjdk.samtools.util.SortingCollection.spillToDisk(SortingCollection.java:223)
at htsjdk.samtools.util.SortingCollection.add(SortingCollection.java:166)
at htsjdk.samtools.SAMFileWriterImpl.addAlignment(SAMFileWriterImpl.java:192)
at htsjdk.samtools.AsyncSAMFileWriter.synchronouslyWrite(AsyncSAMFileWriter.java:36)
at htsjdk.samtools.AsyncSAMFileWriter.synchronouslyWrite(AsyncSAMFileWriter.java:16)
at htsjdk.samtools.util.AbstractAsyncWriter$WriterRunnable.run(AbstractAsyncWriter.java:117)
at java.lang.Thread.run(Thread.java:745)