com.hp.hpl.jena.sdb.sql.SDBExceptionSQL

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  • I cannot create a new classgroup. I deployed and started a vivo system, logged in as root, created a new class (that worked) attempted to create a new classgroup called "newclassgroup" with rank 9 and got an error on the form that said "SQLException in executing SQL statement" In the logs there is a message about DB connections: 2013-10-04 10:54:39,158 WARN [QueryIteratorCheck] Open iterator: QueryIterTriplePattern$TripleMapper/164085 2013-10-04 10:54:39,161 ERROR [OperationController] edu.cornell.mannlib.vedit.controller.OperationController encountered exception performing edit action 2013-10-04 10:54:39,161 ERROR [OperationController] com.hp.hpl.jena.sdb.sql.SDBExceptionSQL: SQLException in executing SQL statement com.hp.hpl.jena.sdb.sql.SDBExceptionSQL: SQLException in executing SQL statement at com.hp.hpl.jena.sdb.compiler.SDB_QC.exec(SDB_QC.java:72) at com.hp.hpl.jena.sdb.compiler.OpSQL.exec(OpSQL.java:53) at com.hp.hpl.jena.sdb.engine.QueryEngineSDB.eval(QueryEngineSDB.java:129) at com.hp.hpl.jena.sparql.engine.QueryEngineBase.evaluate(QueryEngineBase.java:138) at com.hp.hpl.jena.sparql.engine.QueryEngineBase.createPlan(QueryEngineBase.java:109) at com.hp.hpl.jena.sparql.engine.QueryEngineBase.getPlan(QueryEngineBase.java:97) at com.hp.hpl.jena.sdb.engine.QueryEngineSDB$QueryEngineFactorySDB.create(QueryEngineSDB.java:154) at com.hp.hpl.jena.sparql.engine.QueryExecutionBase.getPlan(QueryExecutionBase.java:266) at com.hp.hpl.jena.sparql.engine.QueryExecutionBase.startQueryIterator(QueryExecutionBase.java:243) at com.hp.hpl.jena.sparql.engine.QueryExecutionBase.execResultSet(QueryExecutionBase.java:248) at com.hp.hpl.jena.sparql.engine.QueryExecutionBase.execSelect(QueryExecutionBase.java:94) at edu.cornell.mannlib.vitro.webapp.rdfservice.impl.jena.RDFServiceJena.sparqlSelectQuery(RDFServiceJena.java:343) at edu.cornell.mannlib.vitro.webapp.rdfservice.filter.LanguageFilteringRDFService.sparqlSelectQuery(LanguageFilteringRDFService.java:163) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.execSelect(RDFServiceGraph.java:395) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:254) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:186) at com.hp.hpl.jena.graph.compose.MultiUnion.singleGraphFind(MultiUnion.java:175) at com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseFind(MultiUnion.java:166) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240) at com.hp.hpl.jena.graph.impl.GraphBase.graphBaseFind(GraphBase.java:260) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:257) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterTriplePattern$TripleMapper.<init>(QueryIterTriplePattern.java:67) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterTriplePattern.nextStage(QueryIterTriplePattern.java:41) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:91) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:52) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:66) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterBlockTriples.hasNextBinding(QueryIterBlockTriples.java:53) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:66) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorWrapper.hasNextBinding(QueryIteratorWrapper.java:28) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:66) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorWrapper.hasNextBinding(QueryIteratorWrapper.java:28) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:66) at com.hp.hpl.jena.sparql.engine.ResultSetStream.hasNext(ResultSetStream.java:57) at com.hp.hpl.jena.sparql.resultset.ResultSetApply.apply(ResultSetApply.java:29) at com.hp.hpl.jena.sparql.resultset.JSONOutput.format(JSONOutput.java:23) at com.hp.hpl.jena.query.ResultSetFormatter.outputAsJSON(ResultSetFormatter.java:542) at edu.cornell.mannlib.vitro.webapp.rdfservice.impl.jena.RDFServiceJena.sparqlSelectQuery(RDFServiceJena.java:353) at edu.cornell.mannlib.vitro.webapp.rdfservice.filter.LanguageFilteringRDFService.sparqlSelectQuery(LanguageFilteringRDFService.java:163) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.execSelect(RDFServiceGraph.java:395) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:254) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:186) at com.hp.hpl.jena.graph.compose.MultiUnion.singleGraphFind(MultiUnion.java:175) at com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseFind(MultiUnion.java:166) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240) at com.hp.hpl.jena.graph.compose.Union.graphBaseFind(Union.java:53) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240) at com.hp.hpl.jena.graph.compose.MultiUnion.singleGraphFind(MultiUnion.java:175) at com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseFind(MultiUnion.java:166) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240) at com.hp.hpl.jena.graph.impl.GraphBase.graphBaseFind(GraphBase.java:260) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:257) at com.hp.hpl.jena.rdf.model.impl.ModelCom.listStatements(ModelCom.java:378) at com.hp.hpl.jena.rdf.model.impl.ModelCom.listStatements(ModelCom.java:383) at edu.cornell.mannlib.vitro.webapp.utils.jena.URIUtils.hasExistingURI(URIUtils.java:26) at edu.cornell.mannlib.vitro.webapp.dao.jena.WebappDaoFactoryJena.hasExistingURI(WebappDaoFactoryJena.java:209) at edu.cornell.mannlib.vitro.webapp.dao.jena.WebappDaoFactoryJena.checkURI(WebappDaoFactoryJena.java:190) at edu.cornell.mannlib.vitro.webapp.dao.jena.WebappDaoFactoryJena.checkURI(WebappDaoFactoryJena.java:174) at edu.cornell.mannlib.vitro.webapp.dao.jena.IndividualDaoJena.getUnusedURI(IndividualDaoJena.java:667) at edu.cornell.mannlib.vitro.webapp.dao.jena.IndividualDaoJena.insertNewIndividual(IndividualDaoJena.java:210) at edu.cornell.mannlib.vitro.webapp.dao.jena.IndividualDaoJena.insertNewIndividualWebapp(IndividualDaoJena.java:201) at edu.cornell.mannlib.vitro.webapp.dao.jena.IndividualDaoJena.insertNewIndividual(IndividualDaoJena.java:196) at edu.cornell.mannlib.vitro.webapp.dao.jena.VClassGroupDaoJena.insertNewVClassGroup(VClassGroupDaoJena.java:213) at edu.cornell.mannlib.vitro.webapp.dao.jena.VClassGroupDaoJena.insertNewVClassGroup(VClassGroupDaoJena.java:185) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at edu.cornell.mannlib.vedit.controller.OperationController.performEdit(OperationController.java:457) at edu.cornell.mannlib.vedit.controller.OperationController.doPost(OperationController.java:118) at javax.servlet.http.HttpServlet.service(HttpServlet.java:641) at javax.servlet.http.HttpServlet.service(HttpServlet.java:722) at edu.cornell.mannlib.vitro.webapp.controller.VitroHttpServlet.service(VitroHttpServlet.java:65) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:304) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.PageRoutingFilter.doNonDisplayPage(PageRoutingFilter.java:110) at edu.cornell.mannlib.vitro.webapp.filters.PageRoutingFilter.doFilter(PageRoutingFilter.java:101) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.RequestModelsPrep.doFilter(RequestModelsPrep.java:106) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.URLRewriterFilter.doFilter(URLRewriterFilter.java:38) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.JSessionStripFilter.doFilter(JSessionStripFilter.java:60) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.CachingResponseFilter.produceBasicResponse(CachingResponseFilter.java:322) at edu.cornell.mannlib.vitro.webapp.filters.CachingResponseFilter.doFilter(CachingResponseFilter.java:115) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.i18n.selection.LocaleSelectionFilter.doFilter(LocaleSelectionFilter.java:63) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.CharsetEncodingFilter.doFilter(CharsetEncodingFilter.java:25) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.SessionTimeoutLimitingFilter.doFilter(SessionTimeoutLimitingFilter.java:39) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.StartupStatusDisplayFilter.doFilter(StartupStatusDisplayFilter.java:64) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:240) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:164) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:498) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:164) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100) at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:562) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:394) at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:243) at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:188) at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:302) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:724) Caused by: java.sql.SQLException: You can't operate on a closed Connection!!! at com.mchange.v2.sql.SqlUtils.toSQLException(SqlUtils.java:106) at com.mchange.v2.sql.SqlUtils.toSQLException(SqlUtils.java:65) at com.mchange.v2.c3p0.impl.NewProxyConnection.createStatement(NewProxyConnection.java:191) at com.hp.hpl.jena.sdb.sql.SDBConnection.execQuery(SDBConnection.java:107) at com.hp.hpl.jena.sdb.compiler.SDB_QC.exec(SDB_QC.java:60) ... 116 more Caused by: java.lang.NullPointerException at com.mchange.v2.c3p0.impl.NewProxyConnection.createStatement(NewProxyConnection.java:183) ... 118 more
    via by Brian Caruso,
  • I cannot create a new classgroup. I deployed and started a vivo system, logged in as root, created a new class (that worked) attempted to create a new classgroup called "newclassgroup" with rank 9 and got an error on the form that said "SQLException in executing SQL statement" In the logs there is a message about DB connections: 2013-10-04 10:54:39,158 WARN [QueryIteratorCheck] Open iterator: QueryIterTriplePattern$TripleMapper/164085 2013-10-04 10:54:39,161 ERROR [OperationController] edu.cornell.mannlib.vedit.controller.OperationController encountered exception performing edit action 2013-10-04 10:54:39,161 ERROR [OperationController] com.hp.hpl.jena.sdb.sql.SDBExceptionSQL: SQLException in executing SQL statement com.hp.hpl.jena.sdb.sql.SDBExceptionSQL: SQLException in executing SQL statement at com.hp.hpl.jena.sdb.compiler.SDB_QC.exec(SDB_QC.java:72) at com.hp.hpl.jena.sdb.compiler.OpSQL.exec(OpSQL.java:53) at com.hp.hpl.jena.sdb.engine.QueryEngineSDB.eval(QueryEngineSDB.java:129) at com.hp.hpl.jena.sparql.engine.QueryEngineBase.evaluate(QueryEngineBase.java:138) at com.hp.hpl.jena.sparql.engine.QueryEngineBase.createPlan(QueryEngineBase.java:109) at com.hp.hpl.jena.sparql.engine.QueryEngineBase.getPlan(QueryEngineBase.java:97) at com.hp.hpl.jena.sdb.engine.QueryEngineSDB$QueryEngineFactorySDB.create(QueryEngineSDB.java:154) at com.hp.hpl.jena.sparql.engine.QueryExecutionBase.getPlan(QueryExecutionBase.java:266) at com.hp.hpl.jena.sparql.engine.QueryExecutionBase.startQueryIterator(QueryExecutionBase.java:243) at com.hp.hpl.jena.sparql.engine.QueryExecutionBase.execResultSet(QueryExecutionBase.java:248) at com.hp.hpl.jena.sparql.engine.QueryExecutionBase.execSelect(QueryExecutionBase.java:94) at edu.cornell.mannlib.vitro.webapp.rdfservice.impl.jena.RDFServiceJena.sparqlSelectQuery(RDFServiceJena.java:343) at edu.cornell.mannlib.vitro.webapp.rdfservice.filter.LanguageFilteringRDFService.sparqlSelectQuery(LanguageFilteringRDFService.java:163) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.execSelect(RDFServiceGraph.java:395) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:254) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:186) at com.hp.hpl.jena.graph.compose.MultiUnion.singleGraphFind(MultiUnion.java:175) at com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseFind(MultiUnion.java:166) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240) at com.hp.hpl.jena.graph.impl.GraphBase.graphBaseFind(GraphBase.java:260) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:257) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterTriplePattern$TripleMapper.<init>(QueryIterTriplePattern.java:67) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterTriplePattern.nextStage(QueryIterTriplePattern.java:41) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:91) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:52) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:66) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterBlockTriples.hasNextBinding(QueryIterBlockTriples.java:53) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:66) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorWrapper.hasNextBinding(QueryIteratorWrapper.java:28) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:66) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorWrapper.hasNextBinding(QueryIteratorWrapper.java:28) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:66) at com.hp.hpl.jena.sparql.engine.ResultSetStream.hasNext(ResultSetStream.java:57) at com.hp.hpl.jena.sparql.resultset.ResultSetApply.apply(ResultSetApply.java:29) at com.hp.hpl.jena.sparql.resultset.JSONOutput.format(JSONOutput.java:23) at com.hp.hpl.jena.query.ResultSetFormatter.outputAsJSON(ResultSetFormatter.java:542) at edu.cornell.mannlib.vitro.webapp.rdfservice.impl.jena.RDFServiceJena.sparqlSelectQuery(RDFServiceJena.java:353) at edu.cornell.mannlib.vitro.webapp.rdfservice.filter.LanguageFilteringRDFService.sparqlSelectQuery(LanguageFilteringRDFService.java:163) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.execSelect(RDFServiceGraph.java:395) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:254) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:186) at com.hp.hpl.jena.graph.compose.MultiUnion.singleGraphFind(MultiUnion.java:175) at com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseFind(MultiUnion.java:166) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240) at com.hp.hpl.jena.graph.compose.Union.graphBaseFind(Union.java:53) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240) at com.hp.hpl.jena.graph.compose.MultiUnion.singleGraphFind(MultiUnion.java:175) at com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseFind(MultiUnion.java:166) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240) at com.hp.hpl.jena.graph.impl.GraphBase.graphBaseFind(GraphBase.java:260) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:257) at com.hp.hpl.jena.rdf.model.impl.ModelCom.listStatements(ModelCom.java:378) at com.hp.hpl.jena.rdf.model.impl.ModelCom.listStatements(ModelCom.java:383) at edu.cornell.mannlib.vitro.webapp.utils.jena.URIUtils.hasExistingURI(URIUtils.java:26) at edu.cornell.mannlib.vitro.webapp.dao.jena.WebappDaoFactoryJena.hasExistingURI(WebappDaoFactoryJena.java:209) at edu.cornell.mannlib.vitro.webapp.dao.jena.WebappDaoFactoryJena.checkURI(WebappDaoFactoryJena.java:190) at edu.cornell.mannlib.vitro.webapp.dao.jena.WebappDaoFactoryJena.checkURI(WebappDaoFactoryJena.java:174) at edu.cornell.mannlib.vitro.webapp.dao.jena.IndividualDaoJena.getUnusedURI(IndividualDaoJena.java:667) at edu.cornell.mannlib.vitro.webapp.dao.jena.IndividualDaoJena.insertNewIndividual(IndividualDaoJena.java:210) at edu.cornell.mannlib.vitro.webapp.dao.jena.IndividualDaoJena.insertNewIndividualWebapp(IndividualDaoJena.java:201) at edu.cornell.mannlib.vitro.webapp.dao.jena.IndividualDaoJena.insertNewIndividual(IndividualDaoJena.java:196) at edu.cornell.mannlib.vitro.webapp.dao.jena.VClassGroupDaoJena.insertNewVClassGroup(VClassGroupDaoJena.java:213) at edu.cornell.mannlib.vitro.webapp.dao.jena.VClassGroupDaoJena.insertNewVClassGroup(VClassGroupDaoJena.java:185) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at edu.cornell.mannlib.vedit.controller.OperationController.performEdit(OperationController.java:457) at edu.cornell.mannlib.vedit.controller.OperationController.doPost(OperationController.java:118) at javax.servlet.http.HttpServlet.service(HttpServlet.java:641) at javax.servlet.http.HttpServlet.service(HttpServlet.java:722) at edu.cornell.mannlib.vitro.webapp.controller.VitroHttpServlet.service(VitroHttpServlet.java:65) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:304) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.PageRoutingFilter.doNonDisplayPage(PageRoutingFilter.java:110) at edu.cornell.mannlib.vitro.webapp.filters.PageRoutingFilter.doFilter(PageRoutingFilter.java:101) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.RequestModelsPrep.doFilter(RequestModelsPrep.java:106) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.URLRewriterFilter.doFilter(URLRewriterFilter.java:38) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.JSessionStripFilter.doFilter(JSessionStripFilter.java:60) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.CachingResponseFilter.produceBasicResponse(CachingResponseFilter.java:322) at edu.cornell.mannlib.vitro.webapp.filters.CachingResponseFilter.doFilter(CachingResponseFilter.java:115) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.i18n.selection.LocaleSelectionFilter.doFilter(LocaleSelectionFilter.java:63) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.CharsetEncodingFilter.doFilter(CharsetEncodingFilter.java:25) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.SessionTimeoutLimitingFilter.doFilter(SessionTimeoutLimitingFilter.java:39) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.StartupStatusDisplayFilter.doFilter(StartupStatusDisplayFilter.java:64) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:240) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:164) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:498) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:164) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100) at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:562) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:394) at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:243) at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:188) at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:302) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:724) Caused by: java.sql.SQLException: You can't operate on a closed Connection!!! at com.mchange.v2.sql.SqlUtils.toSQLException(SqlUtils.java:106) at com.mchange.v2.sql.SqlUtils.toSQLException(SqlUtils.java:65) at com.mchange.v2.c3p0.impl.NewProxyConnection.createStatement(NewProxyConnection.java:191) at com.hp.hpl.jena.sdb.sql.SDBConnection.execQuery(SDBConnection.java:107) at com.hp.hpl.jena.sdb.compiler.SDB_QC.exec(SDB_QC.java:60) ... 116 more Caused by: java.lang.NullPointerException at com.mchange.v2.c3p0.impl.NewProxyConnection.createStatement(NewProxyConnection.java:183) ... 118 more
    via by Brian Caruso,
    • com.hp.hpl.jena.sdb.sql.SDBExceptionSQL: SQLException in executing SQL statement at com.hp.hpl.jena.sdb.compiler.SDB_QC.exec(SDB_QC.java:72) at com.hp.hpl.jena.sdb.compiler.OpSQL.exec(OpSQL.java:53) at com.hp.hpl.jena.sdb.engine.QueryEngineSDB.eval(QueryEngineSDB.java:129) at com.hp.hpl.jena.sparql.engine.QueryEngineBase.evaluate(QueryEngineBase.java:138) at com.hp.hpl.jena.sparql.engine.QueryEngineBase.createPlan(QueryEngineBase.java:109) at com.hp.hpl.jena.sparql.engine.QueryEngineBase.getPlan(QueryEngineBase.java:97) at com.hp.hpl.jena.sdb.engine.QueryEngineSDB$QueryEngineFactorySDB.create(QueryEngineSDB.java:154) at com.hp.hpl.jena.sparql.engine.QueryExecutionBase.getPlan(QueryExecutionBase.java:266) at com.hp.hpl.jena.sparql.engine.QueryExecutionBase.startQueryIterator(QueryExecutionBase.java:243) at com.hp.hpl.jena.sparql.engine.QueryExecutionBase.execResultSet(QueryExecutionBase.java:248) at com.hp.hpl.jena.sparql.engine.QueryExecutionBase.execSelect(QueryExecutionBase.java:94) at edu.cornell.mannlib.vitro.webapp.rdfservice.impl.jena.RDFServiceJena.sparqlSelectQuery(RDFServiceJena.java:343) at edu.cornell.mannlib.vitro.webapp.rdfservice.filter.LanguageFilteringRDFService.sparqlSelectQuery(LanguageFilteringRDFService.java:163) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.execSelect(RDFServiceGraph.java:395) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:254) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:186) at com.hp.hpl.jena.graph.compose.MultiUnion.singleGraphFind(MultiUnion.java:175) at com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseFind(MultiUnion.java:166) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240) at com.hp.hpl.jena.graph.impl.GraphBase.graphBaseFind(GraphBase.java:260) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:257) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterTriplePattern$TripleMapper.<init>(QueryIterTriplePattern.java:67) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterTriplePattern.nextStage(QueryIterTriplePattern.java:41) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:91) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:52) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:66) at com.hp.hpl.jena.sparql.engine.iterator.QueryIterBlockTriples.hasNextBinding(QueryIterBlockTriples.java:53) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:66) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorWrapper.hasNextBinding(QueryIteratorWrapper.java:28) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:66) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorWrapper.hasNextBinding(QueryIteratorWrapper.java:28) at com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:66) at com.hp.hpl.jena.sparql.engine.ResultSetStream.hasNext(ResultSetStream.java:57) at com.hp.hpl.jena.sparql.resultset.ResultSetApply.apply(ResultSetApply.java:29) at com.hp.hpl.jena.sparql.resultset.JSONOutput.format(JSONOutput.java:23) at com.hp.hpl.jena.query.ResultSetFormatter.outputAsJSON(ResultSetFormatter.java:542) at edu.cornell.mannlib.vitro.webapp.rdfservice.impl.jena.RDFServiceJena.sparqlSelectQuery(RDFServiceJena.java:353) at edu.cornell.mannlib.vitro.webapp.rdfservice.filter.LanguageFilteringRDFService.sparqlSelectQuery(LanguageFilteringRDFService.java:163) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.execSelect(RDFServiceGraph.java:395) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:254) at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:186) at com.hp.hpl.jena.graph.compose.MultiUnion.singleGraphFind(MultiUnion.java:175) at com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseFind(MultiUnion.java:166) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240) at com.hp.hpl.jena.graph.compose.Union.graphBaseFind(Union.java:53) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240) at com.hp.hpl.jena.graph.compose.MultiUnion.singleGraphFind(MultiUnion.java:175) at com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseFind(MultiUnion.java:166) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240) at com.hp.hpl.jena.graph.impl.GraphBase.graphBaseFind(GraphBase.java:260) at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:257) at com.hp.hpl.jena.rdf.model.impl.ModelCom.listStatements(ModelCom.java:378) at com.hp.hpl.jena.rdf.model.impl.ModelCom.listStatements(ModelCom.java:383) at edu.cornell.mannlib.vitro.webapp.utils.jena.URIUtils.hasExistingURI(URIUtils.java:26) at edu.cornell.mannlib.vitro.webapp.dao.jena.WebappDaoFactoryJena.hasExistingURI(WebappDaoFactoryJena.java:209) at edu.cornell.mannlib.vitro.webapp.dao.jena.WebappDaoFactoryJena.checkURI(WebappDaoFactoryJena.java:190) at edu.cornell.mannlib.vitro.webapp.dao.jena.WebappDaoFactoryJena.checkURI(WebappDaoFactoryJena.java:174) at edu.cornell.mannlib.vitro.webapp.dao.jena.IndividualDaoJena.getUnusedURI(IndividualDaoJena.java:667) at edu.cornell.mannlib.vitro.webapp.dao.jena.IndividualDaoJena.insertNewIndividual(IndividualDaoJena.java:210) at edu.cornell.mannlib.vitro.webapp.dao.jena.IndividualDaoJena.insertNewIndividualWebapp(IndividualDaoJena.java:201) at edu.cornell.mannlib.vitro.webapp.dao.jena.IndividualDaoJena.insertNewIndividual(IndividualDaoJena.java:196) at edu.cornell.mannlib.vitro.webapp.dao.jena.VClassGroupDaoJena.insertNewVClassGroup(VClassGroupDaoJena.java:213) at edu.cornell.mannlib.vitro.webapp.dao.jena.VClassGroupDaoJena.insertNewVClassGroup(VClassGroupDaoJena.java:185) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at edu.cornell.mannlib.vedit.controller.OperationController.performEdit(OperationController.java:457) at edu.cornell.mannlib.vedit.controller.OperationController.doPost(OperationController.java:118) at javax.servlet.http.HttpServlet.service(HttpServlet.java:641) at javax.servlet.http.HttpServlet.service(HttpServlet.java:722) at edu.cornell.mannlib.vitro.webapp.controller.VitroHttpServlet.service(VitroHttpServlet.java:65) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:304) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.PageRoutingFilter.doNonDisplayPage(PageRoutingFilter.java:110) at edu.cornell.mannlib.vitro.webapp.filters.PageRoutingFilter.doFilter(PageRoutingFilter.java:101) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.RequestModelsPrep.doFilter(RequestModelsPrep.java:106) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.URLRewriterFilter.doFilter(URLRewriterFilter.java:38) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.JSessionStripFilter.doFilter(JSessionStripFilter.java:60) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.CachingResponseFilter.produceBasicResponse(CachingResponseFilter.java:322) at edu.cornell.mannlib.vitro.webapp.filters.CachingResponseFilter.doFilter(CachingResponseFilter.java:115) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.i18n.selection.LocaleSelectionFilter.doFilter(LocaleSelectionFilter.java:63) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.CharsetEncodingFilter.doFilter(CharsetEncodingFilter.java:25) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.SessionTimeoutLimitingFilter.doFilter(SessionTimeoutLimitingFilter.java:39) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at edu.cornell.mannlib.vitro.webapp.filters.StartupStatusDisplayFilter.doFilter(StartupStatusDisplayFilter.java:64) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:240) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:164) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:498) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:164) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100) at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:562) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:394) at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:243) at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:188) at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:302) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:724) Caused by: java.sql.SQLException: You can't operate on a closed Connection!!! at com.mchange.v2.sql.SqlUtils.toSQLException(SqlUtils.java:106) at com.mchange.v2.sql.SqlUtils.toSQLException(SqlUtils.java:65) at com.mchange.v2.c3p0.impl.NewProxyConnection.createStatement(NewProxyConnection.java:191) at com.hp.hpl.jena.sdb.sql.SDBConnection.execQuery(SDBConnection.java:107) at com.hp.hpl.jena.sdb.compiler.SDB_QC.exec(SDB_QC.java:60) ... 116 more Caused by: java.lang.NullPointerException at com.mchange.v2.c3p0.impl.NewProxyConnection.createStatement(NewProxyConnection.java:183) ... 118 more
    No Bugmate found.