java.lang.reflect.InvocationTargetException

GitHub | heuermh | 2 years ago
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Root Cause Analysis

  1. java.lang.NoSuchMethodError

    com.fasterxml.jackson.core.JsonFactory.requiresPropertyOrdering()Z

    at com.fasterxml.jackson.databind.ObjectMapper.<init>()
  2. Jackson
    ObjectMapper.<init>
    1. com.fasterxml.jackson.databind.ObjectMapper.<init>(ObjectMapper.java:445)
    2. com.fasterxml.jackson.databind.ObjectMapper.<init>(ObjectMapper.java:366)
    2 frames
  3. Spark
    MetricsServlet.<init>
    1. org.apache.spark.metrics.sink.MetricsServlet.<init>(MetricsServlet.scala:45)
    1 frame
  4. Java RT
    Constructor.newInstance
    1. sun.reflect.GeneratedConstructorAccessor51.newInstance(Unknown Source)
    2. sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    3. java.lang.reflect.Constructor.newInstance(Constructor.java:422)
    3 frames
  5. Spark
    MetricsSystem$$anonfun$registerSinks$1.apply
    1. org.apache.spark.metrics.MetricsSystem$$anonfun$registerSinks$1.apply(MetricsSystem.scala:173)
    2. org.apache.spark.metrics.MetricsSystem$$anonfun$registerSinks$1.apply(MetricsSystem.scala:167)
    2 frames
  6. Scala
    HashMap.foreach
    1. scala.collection.mutable.HashMap$$anonfun$foreach$1.apply(HashMap.scala:98)
    2. scala.collection.mutable.HashMap$$anonfun$foreach$1.apply(HashMap.scala:98)
    3. scala.collection.mutable.HashTable$class.foreachEntry(HashTable.scala:226)
    4. scala.collection.mutable.HashMap.foreachEntry(HashMap.scala:39)
    5. scala.collection.mutable.HashMap.foreach(HashMap.scala:98)
    5 frames
  7. Spark
    SparkContext.<init>
    1. org.apache.spark.metrics.MetricsSystem.registerSinks(MetricsSystem.scala:167)
    2. org.apache.spark.metrics.MetricsSystem.start(MetricsSystem.scala:89)
    3. org.apache.spark.SparkContext.<init>(SparkContext.scala:346)
    3 frames
  8. org.bdgenomics.utils
    SparkFunSuite$class.setupSparkContext
    1. org.bdgenomics.utils.misc.SparkFunSuite$class.setupSparkContext(SparkFunSuite.scala:51)
    1 frame
  9. org.bdgenomics.adam
    Adam2FastqSuite.setupSparkContext
    1. org.bdgenomics.adam.cli.Adam2FastqSuite.setupSparkContext(ADAM2FastqSuite.scala:27)
    1 frame
  10. org.bdgenomics.utils
    SparkFunSuite$$anonfun$sparkTest$1.apply
    1. org.bdgenomics.utils.misc.SparkFunSuite$$anonfun$sparkTest$1.apply$mcV$sp(SparkFunSuite.scala:94)
    2. org.bdgenomics.utils.misc.SparkFunSuite$$anonfun$sparkTest$1.apply(SparkFunSuite.scala:93)
    3. org.bdgenomics.utils.misc.SparkFunSuite$$anonfun$sparkTest$1.apply(SparkFunSuite.scala:93)
    3 frames
  11. scalatest
    FunSuiteLike$class.runTest
    1. org.scalatest.Transformer$$anonfun$apply$1.apply$mcV$sp(Transformer.scala:22)
    2. org.scalatest.OutcomeOf$class.outcomeOf(OutcomeOf.scala:85)
    3. org.scalatest.OutcomeOf$.outcomeOf(OutcomeOf.scala:104)
    4. org.scalatest.Transformer.apply(Transformer.scala:22)
    5. org.scalatest.Transformer.apply(Transformer.scala:20)
    6. org.scalatest.FunSuiteLike$$anon$1.apply(FunSuiteLike.scala:166)
    7. org.scalatest.Suite$class.withFixture(Suite.scala:1122)
    8. org.scalatest.FunSuite.withFixture(FunSuite.scala:1555)
    9. org.scalatest.FunSuiteLike$class.invokeWithFixture$1(FunSuiteLike.scala:163)
    10. org.scalatest.FunSuiteLike$$anonfun$runTest$1.apply(FunSuiteLike.scala:175)
    11. org.scalatest.FunSuiteLike$$anonfun$runTest$1.apply(FunSuiteLike.scala:175)
    12. org.scalatest.SuperEngine.runTestImpl(Engine.scala:306)
    13. org.scalatest.FunSuiteLike$class.runTest(FunSuiteLike.scala:175)
    13 frames
  12. org.bdgenomics.adam
    Adam2FastqSuite.org$scalatest$BeforeAndAfter$$super$runTest
    1. org.bdgenomics.adam.cli.Adam2FastqSuite.org$scalatest$BeforeAndAfter$$super$runTest(ADAM2FastqSuite.scala:27)
    1 frame
  13. scalatest
    BeforeAndAfter$class.runTest
    1. org.scalatest.BeforeAndAfter$class.runTest(BeforeAndAfter.scala:200)
    1 frame
  14. org.bdgenomics.adam
    Adam2FastqSuite.runTest
    1. org.bdgenomics.adam.cli.Adam2FastqSuite.runTest(ADAM2FastqSuite.scala:27)
    1 frame
  15. scalatest
    SuperEngine$$anonfun$traverseSubNodes$1$1.apply
    1. org.scalatest.FunSuiteLike$$anonfun$runTests$1.apply(FunSuiteLike.scala:208)
    2. org.scalatest.FunSuiteLike$$anonfun$runTests$1.apply(FunSuiteLike.scala:208)
    3. org.scalatest.SuperEngine$$anonfun$traverseSubNodes$1$1.apply(Engine.scala:413)
    4. org.scalatest.SuperEngine$$anonfun$traverseSubNodes$1$1.apply(Engine.scala:401)
    4 frames
  16. Scala
    List.foreach
    1. scala.collection.immutable.List.foreach(List.scala:318)
    1 frame
  17. scalatest
    FunSuiteLike$class.run
    1. org.scalatest.SuperEngine.traverseSubNodes$1(Engine.scala:401)
    2. org.scalatest.SuperEngine.org$scalatest$SuperEngine$$runTestsInBranch(Engine.scala:396)
    3. org.scalatest.SuperEngine.runTestsImpl(Engine.scala:483)
    4. org.scalatest.FunSuiteLike$class.runTests(FunSuiteLike.scala:208)
    5. org.scalatest.FunSuite.runTests(FunSuite.scala:1555)
    6. org.scalatest.Suite$class.run(Suite.scala:1424)
    7. org.scalatest.FunSuite.org$scalatest$FunSuiteLike$$super$run(FunSuite.scala:1555)
    8. org.scalatest.FunSuiteLike$$anonfun$run$1.apply(FunSuiteLike.scala:212)
    9. org.scalatest.FunSuiteLike$$anonfun$run$1.apply(FunSuiteLike.scala:212)
    10. org.scalatest.SuperEngine.runImpl(Engine.scala:545)
    11. org.scalatest.FunSuiteLike$class.run(FunSuiteLike.scala:212)
    11 frames
  18. org.bdgenomics.adam
    Adam2FastqSuite.org$scalatest$BeforeAndAfter$$super$run
    1. org.bdgenomics.adam.cli.Adam2FastqSuite.org$scalatest$BeforeAndAfter$$super$run(ADAM2FastqSuite.scala:27)
    1 frame
  19. scalatest
    BeforeAndAfter$class.run
    1. org.scalatest.BeforeAndAfter$class.run(BeforeAndAfter.scala:241)
    1 frame
  20. org.bdgenomics.adam
    Adam2FastqSuite.run
    1. org.bdgenomics.adam.cli.Adam2FastqSuite.run(ADAM2FastqSuite.scala:27)
    1 frame
  21. scalatest
    Suite$$anonfun$runNestedSuites$1.apply
    1. org.scalatest.Suite$class.callExecuteOnSuite$1(Suite.scala:1492)
    2. org.scalatest.Suite$$anonfun$runNestedSuites$1.apply(Suite.scala:1528)
    3. org.scalatest.Suite$$anonfun$runNestedSuites$1.apply(Suite.scala:1526)
    3 frames
  22. Scala
    ArrayOps$ofRef.foreach
    1. scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
    2. scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
    2 frames
  23. scalatest
    Runner$$anonfun$doRunRunRunDaDoRunRun$3.apply
    1. org.scalatest.Suite$class.runNestedSuites(Suite.scala:1526)
    2. org.scalatest.tools.DiscoverySuite.runNestedSuites(DiscoverySuite.scala:29)
    3. org.scalatest.Suite$class.run(Suite.scala:1421)
    4. org.scalatest.tools.DiscoverySuite.run(DiscoverySuite.scala:29)
    5. org.scalatest.tools.SuiteRunner.run(SuiteRunner.scala:55)
    6. org.scalatest.tools.Runner$$anonfun$doRunRunRunDaDoRunRun$3.apply(Runner.scala:2563)
    7. org.scalatest.tools.Runner$$anonfun$doRunRunRunDaDoRunRun$3.apply(Runner.scala:2557)
    7 frames
  24. Scala
    List.foreach
    1. scala.collection.immutable.List.foreach(List.scala:318)
    1 frame
  25. scalatest
    Runner.main
    1. org.scalatest.tools.Runner$.doRunRunRunDaDoRunRun(Runner.scala:2557)
    2. org.scalatest.tools.Runner$$anonfun$runOptionallyWithPassFailReporter$2.apply(Runner.scala:1044)
    3. org.scalatest.tools.Runner$$anonfun$runOptionallyWithPassFailReporter$2.apply(Runner.scala:1043)
    4. org.scalatest.tools.Runner$.withClassLoaderAndDispatchReporter(Runner.scala:2722)
    5. org.scalatest.tools.Runner$.runOptionallyWithPassFailReporter(Runner.scala:1043)
    6. org.scalatest.tools.Runner$.main(Runner.scala:860)
    7. org.scalatest.tools.Runner.main(Runner.scala)
    7 frames