scheduler.TaskSetManager: Lost task 1.0 in stage 5.0 (TID 11, rz-data-hdp-dn2113.rz.***.com): java.lang.UnsatisfiedLinkError: /data8/hadoop/yarn/nm-local-dir/usercache/hadoop-pay-dev/appcache/application_1468926081807_765036/container_1468926081807_765036_01_000003/tmp/libxgboost4j4481460359283600466.so: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by /data8/hadoop/yarn/nm-local-dir/usercache/hadoop-pay-dev/appcache/application_1468926081807_765036/container_1468926081807_765036_01_000003/tmp/libxgboost4j4481460359283600466.so)

GitHub | yxzf | 8 months ago
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  1. 0

    [jvm-packages] Running xgboost on the yarn-cluster with the error [/lib64/libc.so.6: version `GLIBC_2.14']

    GitHub | 8 months ago | yxzf
    scheduler.TaskSetManager: Lost task 1.0 in stage 5.0 (TID 11, rz-data-hdp-dn2113.rz.***.com): java.lang.UnsatisfiedLinkError: /data8/hadoop/yarn/nm-local-dir/usercache/hadoop-pay-dev/appcache/application_1468926081807_765036/container_1468926081807_765036_01_000003/tmp/libxgboost4j4481460359283600466.so: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by /data8/hadoop/yarn/nm-local-dir/usercache/hadoop-pay-dev/appcache/application_1468926081807_765036/container_1468926081807_765036_01_000003/tmp/libxgboost4j4481460359283600466.so)

    Root Cause Analysis

    1. scheduler.TaskSetManager

      Lost task 1.0 in stage 5.0 (TID 11, rz-data-hdp-dn2113.rz.***.com): java.lang.UnsatisfiedLinkError: /data8/hadoop/yarn/nm-local-dir/usercache/hadoop-pay-dev/appcache/application_1468926081807_765036/container_1468926081807_765036_01_000003/tmp/libxgboost4j4481460359283600466.so: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by /data8/hadoop/yarn/nm-local-dir/usercache/hadoop-pay-dev/appcache/application_1468926081807_765036/container_1468926081807_765036_01_000003/tmp/libxgboost4j4481460359283600466.so)

      at java.lang.ClassLoader$NativeLibrary.load()
    2. Java RT
      System.load
      1. java.lang.ClassLoader$NativeLibrary.load(Native Method)
      2. java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1965)
      3. java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1890)
      4. java.lang.ClassLoader.loadLibrary(ClassLoader.java:1851)
      5. java.lang.Runtime.load0(Runtime.java:795)
      6. java.lang.System.load(System.java:1062)
      6 frames
    3. ml.dmlc.xgboost4j
      XGBoost$$anonfun$buildDistributedBoosters$1.apply
      1. ml.dmlc.xgboost4j.java.NativeLibLoader.loadLibraryFromJar(NativeLibLoader.java:67)
      2. ml.dmlc.xgboost4j.java.NativeLibLoader.smartLoad(NativeLibLoader.java:153)
      3. ml.dmlc.xgboost4j.java.NativeLibLoader.initXGBoost(NativeLibLoader.java:41)
      4. ml.dmlc.xgboost4j.java.Rabit.<clinit>(Rabit.java:18)
      5. ml.dmlc.xgboost4j.scala.spark.XGBoost$$anonfun$buildDistributedBoosters$1.apply(XGBoost.scala:63)
      6. ml.dmlc.xgboost4j.scala.spark.XGBoost$$anonfun$buildDistributedBoosters$1.apply(XGBoost.scala:61)
      6 frames
    4. Spark
      Executor$TaskRunner.run
      1. org.apache.spark.rdd.RDD$$anonfun$mapPartitions$1$$anonfun$apply$17.apply(RDD.scala:706)
      2. org.apache.spark.rdd.RDD$$anonfun$mapPartitions$1$$anonfun$apply$17.apply(RDD.scala:706)
      3. org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
      4. org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:297)
      5. org.apache.spark.CacheManager.getOrCompute(CacheManager.scala:69)
      6. org.apache.spark.rdd.RDD.iterator(RDD.scala:262)
      7. org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
      8. org.apache.spark.scheduler.Task.run(Task.scala:88)
      9. org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
      9 frames
    5. Java RT
      Thread.run
      1. java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
      2. java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
      3. java.lang.Thread.run(Thread.java:745)
      3 frames