java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException: 34

biostars.org | 7 months ago
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    Java Error "Concurrent.Executionexception" While Running Trimmomatic V0.32

    biostars.org | 7 months ago
    java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException: 34

    Root Cause Analysis

    1. java.lang.ArrayIndexOutOfBoundsException

      34

      at org.usadellab.trimmomatic.trim.IlluminaClippingTrimmer$IlluminaPrefixPair.palindromeReadsCompare()
    2. org.usadellab.trimmomatic
      BlockOfWork.call
      1. org.usadellab.trimmomatic.trim.IlluminaClippingTrimmer$IlluminaPrefixPair.palindromeReadsCompare(IlluminaClippingTrimmer.java:377)
      2. org.usadellab.trimmomatic.trim.IlluminaClippingTrimmer$IlluminaPrefixPair.access$100(IlluminaClippingTrimmer.java:319)
      3. org.usadellab.trimmomatic.trim.IlluminaClippingTrimmer.processRecords(IlluminaClippingTrimmer.java:252)
      4. org.usadellab.trimmomatic.threading.BlockOfWork.call(BlockOfWork.java:93)
      5. org.usadellab.trimmomatic.threading.BlockOfWork.call(BlockOfWork.java:11)
      5 frames
    3. Java RT
      Thread.run
      1. java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
      2. java.util.concurrent.FutureTask.run(FutureTask.java:166)
      3. java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
      4. java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
      5. java.lang.Thread.run(Thread.java:722)
      5 frames