java.lang.IllegalStateException: java.lang.ArrayIndexOutOfBoundsException

Google Groups | Ruijuan li | 2 years ago
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  1. 0

    VCF file load problem

    Google Groups | 2 years ago | Ruijuan li
    java.lang.IllegalStateException: java.lang.ArrayIndexOutOfBoundsException
  2. 0

    String index out of range: 2

    Google Groups | 6 months ago | Alexander Berry
    java.lang.IllegalStateException: java.lang.StringIndexOutOfBoundsException: String index out of range: 2 at net.maizegenetics.dna.snp.io<http://net.maizegenetics.dna.snp.io>.BuilderFromVCF.buildEngine(BuilderFromVCF.java:215) at net.maizegenetics.dna.snp.io<http://net.maizegenetics.dna.snp.io>.BuilderFromVCF.build(BuilderFromVCF.java:114)

    Root Cause Analysis

    1. java.lang.IllegalStateException

      java.lang.ArrayIndexOutOfBoundsException

      at net.maizegenetics.dna.snp.io.BuilderFromVCF.buildEngine()
    2. net.maizegenetics.dna
      ImportUtils.readFromVCF
      1. net.maizegenetics.dna.snp.io.BuilderFromVCF.buildEngine(BuilderFromVCF.java:215)
      2. net.maizegenetics.dna.snp.io.BuilderFromVCF.build(BuilderFromVCF.java:114)
      3. net.maizegenetics.dna.snp.ImportUtils.readFromVCF(ImportUtils.java:110)
      4. net.maizegenetics.dna.snp.ImportUtils.readFromVCF(ImportUtils.java:116)
      4 frames
    3. net.maizegenetics.analysis
      FileLoadPlugin.performFunction
      1. net.maizegenetics.analysis.data.FileLoadPlugin.processDatum(FileLoadPlugin.java:465)
      2. net.maizegenetics.analysis.data.FileLoadPlugin.performFunction(FileLoadPlugin.java:249)
      2 frames
    4. net.maizegenetics.plugindef
      ThreadedPluginListener.run
      1. net.maizegenetics.plugindef.AbstractPlugin.dataSetReturned(AbstractPlugin.java:1645)
      2. net.maizegenetics.plugindef.ThreadedPluginListener.run(ThreadedPluginListener.java:29)
      2 frames