java.io.IOException: No FileSystem for scheme: file

There are no available Samebug tips for this exception. Do you have an idea how to solve this issue? A short tip would help users who saw this issue last week.

  • java.io.IOException: No FileSystem for scheme: file at org.apache.hadoop.fs.FileSystem.getFileSystemClass(FileSystem.java:2644) at org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:2651) at org.apache.hadoop.fs.FileSystem.access$200(FileSystem.java:92) at org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:2687) at org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:2669) at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:371) at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:170) at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:355) at org.apache.hadoop.fs.Path.getFileSystem(Path.java:295) at org.hammerlab.guacamole.readsets.ReadSets$.loadFromBAM(ReadSets.scala:173) at org.hammerlab.guacamole.readsets.ReadSets$.load(ReadSets.scala:157) at org.hammerlab.guacamole.readsets.ReadSets$$anonfun$4.apply(ReadSets.scala:113) at org.hammerlab.guacamole.readsets.ReadSets$$anonfun$4.apply(ReadSets.scala:111) at scala.collection.TraversableLike$WithFilter$$anonfun$map$2.apply(TraversableLike.scala:722) at scala.collection.Iterator$class.foreach(Iterator.scala:727) at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) at scala.collection.IterableLike$class.foreach(IterableLike.scala:72) at scala.collection.AbstractIterable.foreach(Iterable.scala:54) at scala.collection.TraversableLike$WithFilter.map(TraversableLike.scala:721) at org.hammerlab.guacamole.readsets.ReadSets$.apply(ReadSets.scala:111) at org.hammerlab.guacamole.readsets.ReadSets$.apply(ReadSets.scala:96) at org.hammerlab.guacamole.commands.jointcaller.SomaticJoint$.inputsToReadSets(SomaticJointCaller.scala:69) at org.hammerlab.guacamole.commands.jointcaller.SomaticJoint$Caller$.run(SomaticJointCaller.scala:93) at org.hammerlab.guacamole.commands.jointcaller.SomaticJoint$Caller$.run(SomaticJointCaller.scala:77) at org.hammerlab.guacamole.commands.SparkCommand.run(SparkCommand.scala:12) at org.hammerlab.guacamole.commands.Command.run(Command.scala:46) at org.hammerlab.guacamole.Main$.main(Main.scala:68) at org.hammerlab.guacamole.Main.main(Main.scala)

Users with the same issue

jstrayer
jstrayer1 times, last one,
Unknown visitor1 times, last one,
Unknown visitor1 times, last one,
Unknown visitor1 times, last one,
tyson925
tyson9253 times, last one,
18 more bugmates