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java.io.IOException: No FileSystem for scheme: file at org.apache.hadoop.fs.FileSystem.getFileSystemClass(FileSystem.java:2644) at org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:2651) at org.apache.hadoop.fs.FileSystem.access$200(FileSystem.java:92) at org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:2687) at org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:2669) at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:371) at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:170) at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:355) at org.apache.hadoop.fs.Path.getFileSystem(Path.java:295) at org.hammerlab.guacamole.readsets.ReadSets$.loadFromBAM(ReadSets.scala:173) at org.hammerlab.guacamole.readsets.ReadSets$.load(ReadSets.scala:157) at org.hammerlab.guacamole.readsets.ReadSets$$anonfun$4.apply(ReadSets.scala:113) at org.hammerlab.guacamole.readsets.ReadSets$$anonfun$4.apply(ReadSets.scala:111) at scala.collection.TraversableLike$WithFilter$$anonfun$map$2.apply(TraversableLike.scala:722) at scala.collection.Iterator$class.foreach(Iterator.scala:727) at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) at scala.collection.IterableLike$class.foreach(IterableLike.scala:72) at scala.collection.AbstractIterable.foreach(Iterable.scala:54) at scala.collection.TraversableLike$WithFilter.map(TraversableLike.scala:721) at org.hammerlab.guacamole.readsets.ReadSets$.apply(ReadSets.scala:111) at org.hammerlab.guacamole.readsets.ReadSets$.apply(ReadSets.scala:96) at org.hammerlab.guacamole.commands.jointcaller.SomaticJoint$.inputsToReadSets(SomaticJointCaller.scala:69) at org.hammerlab.guacamole.commands.jointcaller.SomaticJoint$Caller$.run(SomaticJointCaller.scala:93) at org.hammerlab.guacamole.commands.jointcaller.SomaticJoint$Caller$.run(SomaticJointCaller.scala:77) at org.hammerlab.guacamole.commands.SparkCommand.run(SparkCommand.scala:12) at org.hammerlab.guacamole.commands.Command.run(Command.scala:46) at org.hammerlab.guacamole.Main$.main(Main.scala:68) at org.hammerlab.guacamole.Main.main(Main.scala)