java.io.IOException: No FileSystem for scheme: file

GitHub | timodonnell | 5 months ago
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    hadoop No FileSystem for scheme: file

    Stack Overflow | 3 years ago | Mahender Singh
    java.io.IOException: No FileSystem for scheme: file
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    spark-shell error : No FileSystem for scheme: wasb - Hortonworks

    hortonworks.com | 4 months ago
    java.io.IOException: No FileSystem for scheme: wasb

  1. tyson925 3 times, last 4 months ago
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Root Cause Analysis

  1. java.io.IOException

    No FileSystem for scheme: file

    at org.apache.hadoop.fs.FileSystem.getFileSystemClass()
  2. Hadoop
    Path.getFileSystem
    1. org.apache.hadoop.fs.FileSystem.getFileSystemClass(FileSystem.java:2644)
    2. org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:2651)
    3. org.apache.hadoop.fs.FileSystem.access$200(FileSystem.java:92)
    4. org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:2687)
    5. org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:2669)
    6. org.apache.hadoop.fs.FileSystem.get(FileSystem.java:371)
    7. org.apache.hadoop.fs.FileSystem.get(FileSystem.java:170)
    8. org.apache.hadoop.fs.FileSystem.get(FileSystem.java:355)
    9. org.apache.hadoop.fs.Path.getFileSystem(Path.java:295)
    9 frames
  3. org.hammerlab.guacamole
    ReadSets$$anonfun$4.apply
    1. org.hammerlab.guacamole.readsets.ReadSets$.loadFromBAM(ReadSets.scala:173)
    2. org.hammerlab.guacamole.readsets.ReadSets$.load(ReadSets.scala:157)
    3. org.hammerlab.guacamole.readsets.ReadSets$$anonfun$4.apply(ReadSets.scala:113)
    4. org.hammerlab.guacamole.readsets.ReadSets$$anonfun$4.apply(ReadSets.scala:111)
    4 frames
  4. Scala
    TraversableLike$WithFilter.map
    1. scala.collection.TraversableLike$WithFilter$$anonfun$map$2.apply(TraversableLike.scala:722)
    2. scala.collection.Iterator$class.foreach(Iterator.scala:727)
    3. scala.collection.AbstractIterator.foreach(Iterator.scala:1157)
    4. scala.collection.IterableLike$class.foreach(IterableLike.scala:72)
    5. scala.collection.AbstractIterable.foreach(Iterable.scala:54)
    6. scala.collection.TraversableLike$WithFilter.map(TraversableLike.scala:721)
    6 frames
  5. org.hammerlab.guacamole
    Main.main
    1. org.hammerlab.guacamole.readsets.ReadSets$.apply(ReadSets.scala:111)
    2. org.hammerlab.guacamole.readsets.ReadSets$.apply(ReadSets.scala:96)
    3. org.hammerlab.guacamole.commands.jointcaller.SomaticJoint$.inputsToReadSets(SomaticJointCaller.scala:69)
    4. org.hammerlab.guacamole.commands.jointcaller.SomaticJoint$Caller$.run(SomaticJointCaller.scala:93)
    5. org.hammerlab.guacamole.commands.jointcaller.SomaticJoint$Caller$.run(SomaticJointCaller.scala:77)
    6. org.hammerlab.guacamole.commands.SparkCommand.run(SparkCommand.scala:12)
    7. org.hammerlab.guacamole.commands.Command.run(Command.scala:46)
    8. org.hammerlab.guacamole.Main$.main(Main.scala:68)
    9. org.hammerlab.guacamole.Main.main(Main.scala)
    9 frames