java.lang.OutOfMemoryError: Java heap space

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Root Cause Analysis

  1. java.lang.OutOfMemoryError

    Java heap space

    at java.util.HashMap.resize()
  2. Java RT
    HashMap.put
    1. java.util.HashMap.resize(HashMap.java:703)
    2. java.util.HashMap.putVal(HashMap.java:662)
    3. java.util.HashMap.put(HashMap.java:611)
    3 frames
  3. juicebox.tools.utils
    Preprocessor.preprocess
    1. juicebox.tools.utils.original.Preprocessor$BlockPP.incrementCount(Preprocessor.java:989)
    2. juicebox.tools.utils.original.Preprocessor$MatrixZoomDataPP.incrementCount(Preprocessor.java:1304)
    3. juicebox.tools.utils.original.Preprocessor$MatrixPP.incrementCount(Preprocessor.java:1131)
    4. juicebox.tools.utils.original.Preprocessor.writeBody(Preprocessor.java:375)
    5. juicebox.tools.utils.original.Preprocessor.preprocess(Preprocessor.java:216)
    5 frames
  4. juicebox.tools.clt
    PreProcessing.run
    1. juicebox.tools.clt.old.PreProcessing.run(PreProcessing.java:94)
    1 frame
  5. juicebox.tools
    HiCTools.main
    1. juicebox.tools.HiCTools.main(HiCTools.java:79)
    1 frame