java.lang.NullPointerException

GitHub | Arkarachai | 7 months ago
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    GitHub comment 60#235716759

    GitHub | 7 months ago | Arkarachai
    java.lang.NullPointerException

    Root Cause Analysis

    1. java.lang.NullPointerException

      No message provided

      at htsjdk.samtools.cram.CramContext.<init>()
    2. htsjdk.samtools.cram
      Job.run
      1. htsjdk.samtools.cram.CramContext.<init>(CramContext.java:38)
      2. htsjdk.samtools.cram.CramSerilization.convert(CramSerilization.java:44)
      3. htsjdk.samtools.cram.paralell.BamToCram_OBA_Function.apply(BamToCram_OBA_Function.java:67)
      4. htsjdk.samtools.cram.paralell.BamToCram_OBA_Function.apply(BamToCram_OBA_Function.java:24)
      5. htsjdk.samtools.cram.paralell.TransformerJob.doRun(TransformerJob.java:28)
      6. htsjdk.samtools.cram.paralell.Job.run(Job.java:40)
      6 frames
    3. Java RT
      Thread.run
      1. java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      2. java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      3. java.lang.Thread.run(Thread.java:745)
      3 frames