htsjdk.samtools.SAMException: Error opening file: Homo_sapiens_assembly19.fasta.gz

GitHub | arahuja | 9 months ago
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    Allow reference file to be loaded from HDFS or GS

    GitHub | 9 months ago | arahuja
    htsjdk.samtools.SAMException: Error opening file: Homo_sapiens_assembly19.fasta.gz

    Root Cause Analysis

    1. htsjdk.samtools.SAMException

      Error opening file: Homo_sapiens_assembly19.fasta.gz

      at htsjdk.samtools.util.IOUtil.openGzipFileForReading()
    2. HTS JDK
      FastaSequenceFile.<init>
      1. htsjdk.samtools.util.IOUtil.openGzipFileForReading(IOUtil.java:518)
      2. htsjdk.samtools.util.IOUtil.openFileForReading(IOUtil.java:494)
      3. htsjdk.samtools.reference.FastaSequenceFile.<init>(FastaSequenceFile.java:53)
      3 frames