java.lang.IllegalStateException: IOException thrown when attempting to run binary at uk.ac.ebi.interpro.scan.management.model.implementations.RunBinaryStep.execute(RunBinaryStep.java:140) at uk.ac.ebi.interpro.scan.jms.activemq.StepExecutionTransactionImpl.executeInTransaction(StepExecutionTransactionImpl.java:86)

biostars.org | 9 months ago
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  1. 0

    Interproscan nucleotide sequence scanning

    biostars.org | 9 months ago
    java.lang.IllegalStateException: IOException thrown when attempting to run binary at uk.ac.ebi.interpro.scan.management.model.implementations.RunBinaryStep.execute(RunBinaryStep.java:140) at uk.ac.ebi.interpro.scan.jms.activemq.StepExecutionTransactionImpl.executeInTransaction(StepExecutionTransactionImpl.java:86)
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    Error upgraded to SonarQube 5.5

    Google Groups | 12 months ago | Unknown author
    java.lang.IllegalStateException: com.microsoft.sqlserver.jdbc. >> SQLServerException: Cannot find the object "database_firewall_rules" >> because it does not exist or you do not have permissions. >> at org.sonar.db.charset.DatabaseCharsetChecker.check( >> DatabaseCharsetChecker.java:65) ~[sonar-db-5.5.jar:na] >> at org.sonar.server.db.CheckDatabaseCharsetAtStartup.check( >> CheckDatabaseCharsetAtStartup.java:52) ~[sonar-server-5.5.jar:na] >> at org.sonar.server.db.CheckDatabaseCharsetAtStartup.start( >> CheckDatabaseCharsetAtStartup.java:42) ~[sonar-server-5.5.jar:na] >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
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    Cant persist data: A JTA EntityManager cannot use getTransaction()

    Stack Overflow | 1 year ago | e p
    java.lang.IllegalStateException: A JTA EntityManager cannot use getTransaction() 19:31:51,508 ERROR [stderr] (default task-6) at org.hibernate.jpa.spi.AbstractEntityManagerImpl.getTransaction(AbstractEntityManagerImpl.java:1368) 19:31:51,509 ERROR [stderr] (default task-6) at com.xyz.services.MyClass.getData(MyClass.java:42) 19:31:51,509 ERROR [stderr] (default task-6) at com.xyz.services.MyClass$Proxy$_$$_WeldClientProxy.getData(Unknown Source) 19:31:51,509 ERROR [stderr] (default task-6) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
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    Root Cause Analysis

    1. java.lang.IllegalStateException

      IOException thrown when attempting to run binary at uk.ac.ebi.interpro.scan.management.model.implementations.RunBinaryStep.execute(RunBinaryStep.java:140) at uk.ac.ebi.interpro.scan.jms.activemq.StepExecutionTransactionImpl.executeInTransaction(StepExecutionTransactionImpl.java:86)

      at sun.reflect.NativeMethodAccessorImpl.invoke0()
    2. Java RT
      NativeMethodAccessorImpl.invoke
      1. sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
      2. sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
      2 frames