javax.xml.stream.XMLStreamException: ParseError at [row,col]:[123448,141] Message: Element type "analysis_result" must be followed by either attribute specifications, ">" or "/>".

labkey.org | 9 months ago
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    labkey.org | 2 years ago
    javax.xml.stream.XMLStreamException: ParseError at [row,col]:[123448,141] Message: Element type "analysis_result" must be followed by either attribute specifications, ">" or "/>".
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    labkey.org | 9 months ago
    javax.xml.stream.XMLStreamException: ParseError at [row,col]:[123448,141] Message: Element type "analysis_result" must be followed by either attribute specifications, ">" or "/>".
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    javax.xml.stream.XMLStreamException: ParseError at [row,col]:[1,21855] Message: XML document structures must start and end within the same entity.
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    javax.xml.stream.XMLStreamException: ParseError at [row,col]:[2,488922547] Message: The processing instruction target matching "[xX][mM][lL]" is not allowed.
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    javax.xml.stream.XMLStreamException: ParseError at [row,col]:[2,10] Message: DOCTYPE is disallowed when the feature " " set to true.

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    Root Cause Analysis

    1. javax.xml.stream.XMLStreamException

      ParseError at [row,col]:[123448,141] Message: Element type "analysis_result" must be followed by either attribute specifications, ">" or "/>".

      at com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next()
    2. Java RT
      XMLStreamReaderImpl.next
      1. com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(XMLStreamReaderImpl.java:588)
      1 frame
    3. org.labkey.api
      SimpleXMLStreamReader.skipToStart
      1. org.labkey.api.reader.XMLStreamReaderWrapper.next(XMLStreamReaderWrapper.java:246)
      2. org.labkey.api.reader.SimpleXMLStreamReader.skipTo(SimpleXMLStreamReader.java:81)
      3. org.labkey.api.reader.SimpleXMLStreamReader.skipToStart(SimpleXMLStreamReader.java:67)
      3 frames
    4. org.labkey.ms2
      ProteinProphetPipelineJob.run
      1. org.labkey.ms2.reader.PepXmlLoader$FractionIterator.hasNext(PepXmlLoader.java:104)
      2. org.labkey.ms2.PepXmlImporter.importRun(PepXmlImporter.java:86)
      3. org.labkey.ms2.MS2Importer.upload(MS2Importer.java:199)
      4. org.labkey.ms2.MS2Manager.importRun(MS2Manager.java:585)
      5. org.labkey.ms2.MS2Manager.addRun(MS2Manager.java:570)
      6. org.labkey.ms2.ProteinProphetImporter.importRun(ProteinProphetImporter.java:349)
      7. org.labkey.ms2.ProteinProphetImporter.importFile(ProteinProphetImporter.java:78)
      8. org.labkey.ms2.pipeline.ProteinProphetPipelineJob.run(ProteinProphetPipelineJob.java:69)
      8 frames
    5. Java RT
      Thread.run
      1. java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
      2. java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
      3. java.util.concurrent.FutureTask.run(FutureTask.java:138)
      4. java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
      5. java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207)
      6. java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
      7. java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
      8. java.lang.Thread.run(Thread.java:619)
      8 frames