java.lang.NullPointerException

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    • java.lang.NullPointerException at org.labkey.pipeline.analysis.FileAnalysisJob.findFileInAlternateDirectory(FileAnalysisJob.java:160) at org.labkey.pipeline.analysis.FileAnalysisJob.findFileInAlternateDirectory(FileAnalysisJob.java:165) at org.labkey.pipeline.analysis.FileAnalysisJob.findFileInAlternateDirectory(FileAnalysisJob.java:165) at org.labkey.pipeline.analysis.FileAnalysisJob.findFileInAlternateDirectory(FileAnalysisJob.java:165) at org.labkey.pipeline.analysis.FileAnalysisJob.findFileInAlternateDirectory(FileAnalysisJob.java:165) at org.labkey.pipeline.analysis.FileAnalysisJob.findFileInAlternateDirectory(FileAnalysisJob.java:165) at org.labkey.pipeline.analysis.FileAnalysisJob.findFileInAlternateDirectory(FileAnalysisJob.java:165) at org.labkey.pipeline.analysis.FileAnalysisJob.findFileInAlternateDirectory(FileAnalysisJob.java:165) at org.labkey.pipeline.analysis.FileAnalysisJob.findFileInAlternateDirectory(FileAnalysisJob.java:165) at org.labkey.pipeline.analysis.FileAnalysisJob.findFileInAlternateDirectory(FileAnalysisJob.java:165) at org.labkey.pipeline.analysis.FileAnalysisJob.findFileInAlternateDirectory(FileAnalysisJob.java:165) at org.labkey.pipeline.analysis.FileAnalysisJob.findFile(FileAnalysisJob.java:134) at org.labkey.pipeline.analysis.FileAnalysisJob.findInputFile(FileAnalysisJob.java:81) at org.labkey.pipeline.api.AbstractWorkDirectory.getDir(AbstractWorkDirectory.java:157) at org.labkey.pipeline.api.AbstractWorkDirectory.newFile(AbstractWorkDirectory.java:180) at org.labkey.pipeline.analysis.CommandTaskImpl.newWorkFile(CommandTaskImpl.java:306) at org.labkey.pipeline.analysis.CommandTaskImpl.getWorkFiles(CommandTaskImpl.java:295) at org.labkey.pipeline.analysis.CommandTaskImpl.getProcessPaths(CommandTaskImpl.java:277) at org.labkey.api.pipeline.cmd.TaskPathToCommandArgs.getPaths(TaskPathToCommandArgs.java:57) at org.labkey.api.pipeline.cmd.PathToCommandArgs.toArgsInner(PathToCommandArgs.java:28) at org.labkey.api.pipeline.cmd.TaskToCommandArgs.toArgs(TaskToCommandArgs.java:61) at org.labkey.api.pipeline.cmd.ListToCommandArgs.toArgsInner(ListToCommandArgs.java:70) at org.labkey.api.pipeline.cmd.TaskToCommandArgs.toArgs(TaskToCommandArgs.java:61) at org.labkey.api.pipeline.cmd.EnumToCommandArgs.toArgsInner(EnumToCommandArgs.java:67) at org.labkey.api.pipeline.cmd.TaskToCommandArgs.toArgs(TaskToCommandArgs.java:61) at org.labkey.pipeline.analysis.CommandTaskImpl$Factory.isParticipant(CommandTaskImpl.java:189) at org.labkey.api.pipeline.PipelineJob.findRunnableTask(PipelineJob.java:716) at org.labkey.api.pipeline.PipelineJob.runStateMachine(PipelineJob.java:659) at org.labkey.api.pipeline.PipelineJob.setQueue(PipelineJob.java:473) at org.labkey.pipeline.api.PipelineQueueImpl.addJob(PipelineQueueImpl.java:83) at org.labkey.pipeline.api.PipelineServiceImpl.queueJob(PipelineServiceImpl.java:290) at org.labkey.pipeline.analysis.AnalysisController$StartAnalysisAction.execute(AnalysisController.java:211) at org.labkey.pipeline.analysis.AnalysisController$AbstractAnalysisApiAction.execute(AnalysisController.java:271) at org.labkey.pipeline.analysis.AnalysisController$AbstractAnalysisApiAction.execute(AnalysisController.java:251) at org.labkey.api.action.ApiAction.handlePost(ApiAction.java:144) at org.labkey.api.action.ApiAction.handleRequest(ApiAction.java:95) at org.labkey.api.action.BaseViewAction.handleRequestInternal(BaseViewAction.java:167) at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:153) at org.labkey.api.action.SpringActionController.handleRequest(SpringActionController.java:349) at org.labkey.api.module.DefaultModule.dispatch(DefaultModule.java:756) at org.labkey.api.view.ViewServlet.service(ViewServlet.java:166) at javax.servlet.http.HttpServlet.service(HttpServlet.java:803) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:269) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188) at org.labkey.api.data.TransactionFilter.doFilter(TransactionFilter.java:36) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188) at org.labkey.core.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:118) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188) at org.labkey.api.module.ModuleLoader.doFilter(ModuleLoader.java:603) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188) at org.labkey.api.security.AuthFilter.doFilter(AuthFilter.java:138) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:210) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:174) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:117) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:108) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:151) at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:870) at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:665) at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:528) at org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:81) at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:685) at java.lang.Thread.run(Thread.java:619)
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