java.lang.RuntimeException

XMLStreamException in hasNext()

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    • java.lang.RuntimeException: XMLStreamException in hasNext() at org.labkey.ms2.reader.PepXmlLoader$FractionIterator.hasNext(PepXmlLoader.java:109) at org.labkey.ms2.PepXmlImporter.importRun(PepXmlImporter.java:86) at org.labkey.ms2.MS2Importer.upload(MS2Importer.java:199) at org.labkey.ms2.MS2Manager.importRun(MS2Manager.java:585) at org.labkey.ms2.MS2Manager.addRun(MS2Manager.java:570) at org.labkey.ms2.ProteinProphetImporter.importRun(ProteinProphetImporter.java:349) at org.labkey.ms2.ProteinProphetImporter.importFile(ProteinProphetImporter.java:78) at org.labkey.ms2.pipeline.ProteinProphetPipelineJob.run(ProteinProphetPipelineJob.java:69) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:619) Caused by: javax.xml.stream.XMLStreamException: ParseError at [row,col]:[123448,141] Message: Element type "analysis_result" must be followed by either attribute specifications, ">" or "/>". at com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(XMLStreamReaderImpl.java:588) at org.labkey.api.reader.XMLStreamReaderWrapper.next(XMLStreamReaderWrapper.java:246) at org.labkey.api.reader.SimpleXMLStreamReader.skipTo(SimpleXMLStreamReader.java:81) at org.labkey.api.reader.SimpleXMLStreamReader.skipToStart(SimpleXMLStreamReader.java:67) at org.labkey.ms2.reader.PepXmlLoader$FractionIterator.hasNext(PepXmlLoader.java:104) ... 15 more

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