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    The persistence_2_0.xsd enforces the order of the elements in the xml. Re-ordering them makes then error go away.

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java.io.FileNotFoundException: C:\Program Files\EclipseM6\jenia-popup-config.xml (The system cannot find the file specified)
org.xml.sax.SAXParseException: Premature end of file.	at org.apache.xerces.util.ErrorHandlerWrapper.createSAXParseException(Unknown Source)	at org.apache.xerces.util.ErrorHandlerWrapper.fatalError(Unknown Source)	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)	at org.apache.xerces.impl.XMLScanner.reportFatalError(Unknown Source)	at org.apache.xerces.impl.XMLDocumentScannerImpl$PrologDispatcher.dispatch(Unknown Source)	at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source)	at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)	at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)	at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)	at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)	at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source)	at org.eclipse.wst.common.internal.emf.resource.EMF2SAXRenderer.doLoad(EMF2SAXRenderer.java:93)	at org.eclipse.wst.common.internal.emf.resource.TranslatorResourceImpl.basicDoLoad(TranslatorResourceImpl.java:144)	at org.eclipse.wst.common.internal.emf.resource.CompatibilityXMIResourceImpl.doLoad(CompatibilityXMIResourceImpl.java:175)	at org.eclipse.emf.ecore.resource.impl.ResourceImpl.load(ResourceImpl.java:1445)	at org.eclipse.emf.ecore.resource.impl.ResourceImpl.load(ResourceImpl.java:1241)	at org.eclipse.wst.common.internal.emf.resource.CompatibilityXMIResourceImpl.load(CompatibilityXMIResourceImpl.java:261)	at org.eclipse.wst.common.internal.emf.resource.TranslatorResourceImpl.load(TranslatorResourceImpl.java:389)	at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.demandLoad(ResourceSetImpl.java:255)	at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.demandLoadHelper(ResourceSetImpl.java:270)	at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.getResource(ResourceSetImpl.java:397)	at org.eclipse.jst.j2ee.internal.archive.JavaEEEMFArchiveAdapterHelper.getResource(JavaEEEMFArchiveAdapterHelper.java:121)	at org.eclipse.jst.j2ee.internal.archive.JavaEEEMFArchiveAdapterHelper.getModelObject(JavaEEEMFArchiveAdapterHelper.java:126)	at org.eclipse.jst.j2ee.internal.archive.ComponentArchiveLoadAdapter.getModelObject(ComponentArchiveLoadAdapter.java:661)	at org.eclipse.jst.jee.archive.internal.ArchiveImpl.getModelObject(ArchiveImpl.java:221)	at org.eclipse.jst.j2ee.internal.archive.JavaEEArchiveUtilities.refineForJavaEE(JavaEEArchiveUtilities.java:324)	at org.eclipse.jst.j2ee.internal.archive.JavaEEArchiveUtilities.openArchive(JavaEEArchiveUtilities.java:304)	at org.eclipse.jst.j2ee.internal.archive.JavaEEArchiveUtilities.openArchive(JavaEEArchiveUtilities.java:143)	at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper$ArchiveCache.openArchive(JavaEEBinaryComponentHelper.java:470)	at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper.openArchive(JavaEEBinaryComponentHelper.java:343)	at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper.getUniqueArchive(JavaEEBinaryComponentHelper.java:332)	at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper.getArchive(JavaEEBinaryComponentHelper.java:325)	at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper.getJavaEEQuickPeek(JavaEEBinaryComponentHelper.java:54)	at org.eclipse.jst.j2ee.project.JavaEEProjectUtilities.getJ2EEComponentType(JavaEEProjectUtilities.java:189)	at org.eclipse.jst.j2ee.project.EarUtilities.getComponentReferencesAsList(EarUtilities.java:132)	at org.eclipse.jst.j2ee.project.EarUtilities.getComponentReferences(EarUtilities.java:107)	at org.eclipse.jst.j2ee.project.EarUtilities.getJ2EEModuleReferences(EarUtilities.java:77)	at org.eclipse.jst.j2ee.internal.project.J2EEProjectUtilities.getJ2EEModuleReferences(J2EEProjectUtilities.java:1156)	at com.ibm.etools.ejbdeploy.batch.plugin.BatchExtension.runEarDeploy(BatchExtension.java:389)	at com.ibm.etools.ejbdeploy.batch.plugin.BatchExtension.access$1(BatchExtension.java:354)	at com.ibm.etools.ejbdeploy.batch.plugin.BatchExtension$RunDeploy.run(BatchExtension.java:337)	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:1800)	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:1782)	at com.ibm.etools.ejbdeploy.batch.plugin.BatchExtension$RunDeploy.execute(BatchExtension.java:302)	at com.ibm.etools.ejbdeploy.batch.plugin.BatchExtension.run(BatchExtension.java:265)	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:48)	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:37)	at java.lang.reflect.Method.invoke(Method.java:600)	at org.eclipse.equinox.internal.app.EclipseAppContainer.callMethodWithException(EclipseAppContainer.java:574)	at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:195)	at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)	at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)	at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:386)	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:48)	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:37)	at java.lang.reflect.Method.invoke(Method.java:600)	at com.ibm.etools.ejbdeploy.batch.impl.BootLoaderLoader.run(BootLoaderLoader.java:487)	at com.ibm.etools.ejbdeploy.batch.impl.BatchDeploy.execute(BatchDeploy.java:106)	at com.ibm.etools.ejbdeploy.EJBDeploy.execute(EJBDeploy.java:106)	at com.ibm.etools.ejbdeploy.EJBDeploy.deploy(EJBDeploy.java:349)	at com.ibm.etools.ejbdeploy.EJBDeploy.main(EJBDeploy.java:311)