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via broadinstitute.org by Unknown author, 2 years ago
java.lang.IllegalArgumentException: Comparison method violates its general contract!
via broadinstitute.org by Unknown author, 1 year ago
java.lang.IllegalArgumentException: Comparison method violates its general contract!
via broadinstitute.org by Unknown author, 1 year ago
java.lang.IllegalArgumentException: Comparison method violates its general contract!
java.lang.IllegalArgumentException: Comparison method violates its general contract!	at java.util.TimSort.mergeLo(TimSort.java:747)	at java.util.TimSort.mergeAt(TimSort.java:483)	at java.util.TimSort.mergeCollapse(TimSort.java:410)	at java.util.TimSort.sort(TimSort.java:214)	at java.util.TimSort.sort(TimSort.java:173)	at java.util.Arrays.sort(Arrays.java:659)	at java.util.Collections.sort(Collections.java:217)	at org.broadinstitute.cga.tools.gatk.walkers.cancer.mutect.MuTectWalker.map(MuTectWalker.java:664)	at org.broadinstitute.cga.tools.gatk.walkers.cancer.mutect.MuTectWalker.map(MuTectWalker.java:34)	at org.broadinstitute.sting.gatk.traversals.TraverseLoci.traverse(TraverseLoci.java:77)	at org.broadinstitute.sting.gatk.traversals.TraverseLoci.traverse(TraverseLoci.java:18)	at org.broadinstitute.sting.gatk.executive.LinearMicroScheduler.execute(LinearMicroScheduler.java:61)	at org.broadinstitute.sting.gatk.GenomeAnalysisEngine.execute(GenomeAnalysisEngine.java:225)	at org.broadinstitute.sting.gatk.CommandLineExecutable.execute(CommandLineExecutable.java:104)	at org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:227)	at org.broadinstitute.sting.gatk.CommandLineGATK.main(CommandLineGATK.java:89)