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via broadinstitute.org by Unknown author, 2 years ago
via Stack Overflow by Mohan
, 2 years ago
Comparison method violates its general contract!
via Stack Overflow by Mohan
, 2 years ago
Comparison method violates its general contract!
via Stack Overflow by BasicCoder
, 8 months ago
Comparison method violates its general contract!
via Stack Overflow by ThatOneGuy
, 2 years ago
Comparison method violates its general contract!
java.lang.IllegalArgumentException: Comparison method violates its general contract!	at java.util.TimSort.mergeLo(TimSort.java:747)	at java.util.TimSort.mergeAt(TimSort.java:483)	at java.util.TimSort.mergeForceCollapse(TimSort.java:426)	at java.util.TimSort.sort(TimSort.java:223)	at java.util.TimSort.sort(TimSort.java:173)	at java.util.Arrays.sort(Arrays.java:659)	at java.util.Collections.sort(Collections.java:217)	at org.broadinstitute.cga.tools.gatk.walkers.cancer.mutect.MuTect.map(MuTect.java:480)	at org.broadinstitute.cga.tools.gatk.walkers.cancer.mutect.MuTect.map(MuTect.java:34)	at org.broadinstitute.sting.gatk.traversals.TraverseLociNano$TraverseLociMap.apply(TraverseLociNano.java:243)	at org.broadinstitute.sting.gatk.traversals.TraverseLociNano$TraverseLociMap.apply(TraverseLociNano.java:231)	at org.broadinstitute.sting.utils.nanoScheduler.NanoScheduler.executeSingleThreaded(NanoScheduler.java:287)	at org.broadinstitute.sting.utils.nanoScheduler.NanoScheduler.execute(NanoScheduler.java:252)	at org.broadinstitute.sting.gatk.traversals.TraverseLociNano.traverse(TraverseLociNano.java:120)	at org.broadinstitute.sting.gatk.traversals.TraverseLociNano.traverse(TraverseLociNano.java:67)	at org.broadinstitute.sting.gatk.traversals.TraverseLociNano.traverse(TraverseLociNano.java:23)	at org.broadinstitute.sting.gatk.executive.LinearMicroScheduler.execute(LinearMicroScheduler.java:74)	at org.broadinstitute.sting.gatk.GenomeAnalysisEngine.execute(GenomeAnalysisEngine.java:281)	at org.broadinstitute.sting.gatk.CommandLineExecutable.execute(CommandLineExecutable.java:113)	at org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:236)	at org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:146)	at org.broadinstitute.sting.gatk.CommandLineGATK.main(CommandLineGATK.java:93)