java.lang.RuntimeException: java.lang.IllegalArgumentException: Comparison method violates its general contract!

broadinstitute.org | 6 months ago
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    broadinstitute.org | 1 year ago
    java.lang.RuntimeException: java.lang.IllegalArgumentException: Comparison method violates its general contract!
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    Comparison method violates its general contract! — GATK-Forum

    broadinstitute.org | 6 months ago
    java.lang.RuntimeException: java.lang.IllegalArgumentException: Comparison method violates its general contract!
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    Comparison method violates its general contract! — GATK-Forum

    broadinstitute.org | 2 months ago
    java.lang.RuntimeException: java.lang.IllegalArgumentException: Comparison method violates its general contract!
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    java.lang.ArrayIndexOutOfBoundsException: 83 running MuTect - GATK-Forum

    broadinstitute.org | 1 year ago
    java.lang.RuntimeException: java.lang.ArrayIndexOutOfBoundsException: 83
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    java.lang.ArrayIndexOutOfBoundsException: 83 running MuTect — GATK-Forum

    broadinstitute.org | 6 months ago
    java.lang.RuntimeException: java.lang.ArrayIndexOutOfBoundsException: 83

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    Root Cause Analysis

    1. java.lang.RuntimeException

      java.lang.IllegalArgumentException: Comparison method violates its general contract!

      at org.broadinstitute.cga.tools.gatk.walkers.cancer.mutect.MuTect.map()
    2. org.broadinstitute.cga
      MuTect.map
      1. org.broadinstitute.cga.tools.gatk.walkers.cancer.mutect.MuTect.map(MuTect.java:712)
      2. org.broadinstitute.cga.tools.gatk.walkers.cancer.mutect.MuTect.map(MuTect.java:34)
      2 frames