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java.lang.reflect.InvocationTargetException
java.io.EOFException: 	at htsjdk.tribble.util.LittleEndianInputStream.readFully(LittleEndianInputStream.java:138)	at htsjdk.tribble.util.LittleEndianInputStream.readLong(LittleEndianInputStream.java:80)	at htsjdk.tribble.index.linear.LinearIndex$ChrIndex.read(LinearIndex.java:271)	at htsjdk.tribble.index.AbstractIndex.read(AbstractIndex.java:363)	at htsjdk.tribble.index.linear.LinearIndex.(LinearIndex.java:101)	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)	at java.lang.reflect.Constructor.newInstance(Constructor.java:526)	at htsjdk.tribble.index.IndexFactory.loadIndex(IndexFactory.java:185)	at org.broadinstitute.gatk.engine.refdata.tracks.RMDTrackBuilder.loadFromDisk(RMDTrackBuilder.java:336)	at org.broadinstitute.gatk.engine.refdata.tracks.RMDTrackBuilder.attemptToLockAndLoadIndexFromDisk(RMDTrackBuilder.java:320)	at org.broadinstitute.gatk.engine.refdata.tracks.RMDTrackBuilder.loadIndex(RMDTrackBuilder.java:279)	at org.broadinstitute.gatk.engine.refdata.tracks.RMDTrackBuilder.getFeatureSource(RMDTrackBuilder.java:225)	at org.broadinstitute.gatk.engine.refdata.tracks.RMDTrackBuilder.createInstanceOfTrack(RMDTrackBuilder.java:148)	at org.broadinstitute.gatk.engine.datasources.rmd.ReferenceOrderedQueryDataPool.(ReferenceOrderedDataSource.java:208)	at org.broadinstitute.gatk.engine.datasources.rmd.ReferenceOrderedDataSource.(ReferenceOrderedDataSource.java:88)	at org.broadinstitute.gatk.engine.GenomeAnalysisEngine.getReferenceOrderedDataSources(GenomeAnalysisEngine.java:997)	at org.broadinstitute.gatk.engine.GenomeAnalysisEngine.initializeDataSources(GenomeAnalysisEngine.java:779)	at org.broadinstitute.gatk.engine.GenomeAnalysisEngine.execute(GenomeAnalysisEngine.java:290)	at org.broadinstitute.gatk.engine.CommandLineExecutable.execute(CommandLineExecutable.java:121)	at org.broadinstitute.gatk.utils.commandline.CommandLineProgram.start(CommandLineProgram.java:248)	at org.broadinstitute.gatk.utils.commandline.CommandLineProgram.start(CommandLineProgram.java:155)	at org.broadinstitute.gatk.engine.CommandLineGATK.main(CommandLineGATK.java:107)