java.io.IOException: Could not run search at org.vivoweb.harvester.fetch.nih.PubmedFetch.fetchRecords(PubmedFetch.java:96) ~[harvester.jar:na]

sourceforge.net | 6 months ago
  1. 0

    VIVO / Lists

    sourceforge.net | 6 months ago
    java.io.IOException: Could not run search at org.vivoweb.harvester.fetch.nih.PubmedFetch.fetchRecords(PubmedFetch.java:96) ~[harvester.jar:na]
  2. 0
    Download the winutils.exe for your Hadoop version: https://github.com/steveloughran/winutils . Save it to HADOOP_HOME/bin
  3. 0
    Check for bad records in the input data (like '(null)')
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  5. 0
    Bad input data (not properly separated)
  6. 0
    If you are using maven you'd like to exclude your binaries from filtering process.

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    Root Cause Analysis

    1. java.io.IOException

      Could not run search at org.vivoweb.harvester.fetch.nih.PubmedFetch.fetchRecords(PubmedFetch.java:96) ~[harvester.jar:na]

      at org.vivoweb.harvester.fetch.nih.NIHFetch.execute()
    2. org.vivoweb.harvester
      NIHFetch.execute
      1. org.vivoweb.harvester.fetch.nih.NIHFetch.execute(NIHFetch.java:212)
      1 frame