java.lang.AssertionError

SAM dictionaries are not the same: SAMSequenceRecord(name=chrM,length=16571,dict_index=0,assembly=hg19) was found when SAMSequenceRecord(name=chr1,length=249250621,dict_index=0,assembly=null) was expected.

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  • Stack trace

    • java.lang.AssertionError: SAM dictionaries are not the same: SAMSequenceRecord(name=chrM,length=16571,dict_index=0,assembly=hg19) was found when SAMSequenceRecord(name=chr1,length=249250621,dict_index=0,assembly=null) was expected. at picard.vcf.SortVcf.collectFileReadersAndHeaders(SortVcf.java:112) at picard.vcf.SortVcf.doWork(SortVcf.java:81)

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