htsjdk.samtools.SAMException: Query asks for data past end of contig at htsjdk.samtools.reference.IndexedFastaSequenceFile.getSubsequenceAt(IndexedFastaSequenceFile.java:181) at picard.analysis.directed.TargetMetricsCollector.<init>(TargetMetricsCollector.java:225) at picard.analysis.directed.HsMetricCollector.<init>(HsMetricCollector.java:47) at picard.analysis.directed.CalculateHsMetrics.makeCollector(CalculateHsMetrics.java:96) at picard.analysis.directed.CalculateHsMetrics.makeCollector(CalculateHsMetrics.java:48) at picard.analysis.directed.CollectTargetedMetrics.doWork(CollectTargetedMetrics.java:108) at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:187)

sourceforge.net | 8 months ago
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  1. 0

    SAM tools / Mailing Lists

    ehc.ac | 1 year ago
    htsjdk.samtools.SAMException: Query asks for data past end of contig at htsjdk.samtools.reference.IndexedFastaSequenceFile.getSubsequenceAt(IndexedFastaSequenceFile.java:181) at picard.analysis.directed.TargetMetricsCollector.<init>(TargetMetricsCollector.java:225) at picard.analysis.directed.HsMetricCollector.<init>(HsMetricCollector.java:47) at picard.analysis.directed.CalculateHsMetrics.makeCollector(CalculateHsMetrics.java:96) at picard.analysis.directed.CalculateHsMetrics.makeCollector(CalculateHsMetrics.java:48) at picard.analysis.directed.CollectTargetedMetrics.doWork(CollectTargetedMetrics.java:108) at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:187)
  2. 0

    SAM tools / Mailing Lists

    sourceforge.net | 8 months ago
    htsjdk.samtools.SAMException: Query asks for data past end of contig at htsjdk.samtools.reference.IndexedFastaSequenceFile.getSubsequenceAt(IndexedFastaSequenceFile.java:181) at picard.analysis.directed.TargetMetricsCollector.<init>(TargetMetricsCollector.java:225) at picard.analysis.directed.HsMetricCollector.<init>(HsMetricCollector.java:47) at picard.analysis.directed.CalculateHsMetrics.makeCollector(CalculateHsMetrics.java:96) at picard.analysis.directed.CalculateHsMetrics.makeCollector(CalculateHsMetrics.java:48) at picard.analysis.directed.CollectTargetedMetrics.doWork(CollectTargetedMetrics.java:108) at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:187)

    Root Cause Analysis

    1. htsjdk.samtools.SAMException

      Query asks for data past end of contig at htsjdk.samtools.reference.IndexedFastaSequenceFile.getSubsequenceAt(IndexedFastaSequenceFile.java:181) at picard.analysis.directed.TargetMetricsCollector.<init>(TargetMetricsCollector.java:225) at picard.analysis.directed.HsMetricCollector.<init>(HsMetricCollector.java:47) at picard.analysis.directed.CalculateHsMetrics.makeCollector(CalculateHsMetrics.java:96) at picard.analysis.directed.CalculateHsMetrics.makeCollector(CalculateHsMetrics.java:48) at picard.analysis.directed.CollectTargetedMetrics.doWork(CollectTargetedMetrics.java:108) at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:187)

      at picard.cmdline.PicardCommandLine.instanceMain()
    2. picard.cmdline
      PicardCommandLine.main
      1. picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:89)
      2. picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:99)
      2 frames