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Error parsing SAM header. Problem parsing @PG key:value pair ID:redacted clashes with ID:bwa. Line:
@PG ID:bwa PN:bwa VN:0.7.15-r1140 CL:/export/local/tools/bwa/bwa mem -t 32 -R @RG ID:redacted SM:redacted LB:1 PL:Illumina PM:Miseq PU:MiseqSN.1 CN:OSU /export/local/ref/indices/bwa/grch37/grch37 cutadapt/redacted_R1.fastq cutadapt/redacted_R2.fastq; File /home/x/capture/aligned_grch37/redacted.bam; Line number 88