java.io.FileNotFoundException: c:\path\file.fa.fai (Access is denied)

GitHub | rmzelle | 7 months ago
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Root Cause Analysis

  1. java.io.FileNotFoundException

    c:\path\file.fa.fai (Access is denied)

    at java.io.FileOutputStream.open0()
  2. Java RT
    FileWriter.<init>
    1. java.io.FileOutputStream.open0(Native Method)
    2. java.io.FileOutputStream.open(Unknown Source)
    3. java.io.FileOutputStream.<init>(Unknown Source)
    4. java.io.FileOutputStream.<init>(Unknown Source)
    5. java.io.FileWriter.<init>(Unknown Source)
    5 frames
  3. org.broad.igv
    CommandListener.run
    1. org.broad.igv.feature.genome.FastaUtils.createIndexFile(FastaUtils.java:67)
    2. org.broad.igv.feature.genome.GenomeManager.loadFastaFile(GenomeManager.java:290)
    3. org.broad.igv.feature.genome.GenomeManager.loadGenome(GenomeManager.java:167)
    4. org.broad.igv.ui.IGV.loadGenome(IGV.java:686)
    5. org.broad.igv.ui.IGV.loadGenome(IGV.java:667)
    6. org.broad.igv.ui.IGV.loadGenomeById(IGV.java:657)
    7. org.broad.igv.batch.CommandListener.processGet(CommandListener.java:330)
    8. org.broad.igv.batch.CommandListener.processClientSession(CommandListener.java:201)
    9. org.broad.igv.batch.CommandListener.run(CommandListener.java:111)
    9 frames
  4. Java RT
    Thread.run
    1. java.lang.Thread.run(Unknown Source)
    1 frame