java.lang.NoClassDefFoundError: org/bdgenomics/adam/rdd/ADAMContext$

Google Groups | Unknown author | 4 months ago
  1. 0

    facing issue when loading org.bdgenomics library.

    Google Groups | 4 months ago | Unknown author
    java.lang.NoClassDefFoundError: org/bdgenomics/adam/rdd/ADAMContext$
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    Exception while dispatching incoming RPC call

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    java.lang.NoClassDefFoundError: org/jboss/serial/io/JBossObjectOutputStream
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    Quick question

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    java.lang.NoClassDefFoundError: org/jboss/serial/io/JBossObjectOutputStream
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    java.lang.NoClassDefFoundError: org/apache/spark/streaming/twitter/TwitterUtils$ while running TwitterPopularTags

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    java.lang.NoClassDefFoundError: org/apache/spark/streaming/twitter/TwitterUtils$
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    GitHub | 2 years ago | q42mark
    java.lang.NoClassDefFoundError: ch/qos/logback/core/joran/spi/Pattern

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Root Cause Analysis

  1. java.lang.ClassNotFoundException

    org.bdgenomics.adam.rdd.ADAMContext$

    at java.net.URLClassLoader$1.run()
  2. Java RT
    ClassLoader.loadClass
    1. java.net.URLClassLoader$1.run(URLClassLoader.java:366)
    2. java.net.URLClassLoader$1.run(URLClassLoader.java:355)
    3. java.security.AccessController.doPrivileged(Native Method)
    4. java.net.URLClassLoader.findClass(URLClassLoader.java:354)
    5. java.lang.ClassLoader.loadClass(ClassLoader.java:425)
    6. java.lang.ClassLoader.loadClass(ClassLoader.java:358)
    6 frames
  3. yelp
    genome.main
    1. yelp.genome$.main(genome.scala:32)
    2. yelp.genome.main(genome.scala)
    2 frames
  4. Java RT
    Method.invoke
    1. sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    2. sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    3. sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    4. java.lang.reflect.Method.invoke(Method.java:606)
    4 frames
  5. Spark
    SparkSubmit.main
    1. org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:731)
    2. org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:181)
    3. org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:206)
    4. org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:121)
    5. org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
    5 frames