java.lang.IllegalArgumentException

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  • Reordersam bug?
    via GitHub by dthach1
    ,
  • Structural Variation Toolkit / Mailing Lists
    via by Unknown author,
  • SAM tools / Mailing Lists
    via by Unknown author,
    • java.lang.IllegalArgumentException: Invalid reference index -1 at htsjdk.samtools.QueryInterval.<init>(QueryInterval.java:24) at htsjdk.samtools.SamReader$PrimitiveSamReaderToSamReaderAdapter.query(SamReader.java:503) at picard.sam.ReorderSam.doWork(ReorderSam.java:124) at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:209) at picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:95) at picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:105)
    No Bugmate found.