Searched on Google with the first line of a JAVA stack trace?

We can recommend more relevant solutions and speed up debugging when you paste your entire stack trace with the exception message. Try a sample exception.

Recommended solutions based on your search

Solutions on the web

via GitHub by dthach1
, 1 year ago
Invalid reference index -1
via GitHub by jrobinso
, 5 months ago
via sourceforge.net by Unknown author, 2 years ago
via sourceforge.net by Unknown author, 1 year ago
Invalid reference index -1
via GitHub by dcopetti
, 6 months ago
Invalid reference index -1
via GitHub by dcopetti
, 8 months ago
Invalid reference index -1
java.lang.IllegalArgumentException: Invalid reference index -1	at htsjdk.samtools.QueryInterval.(QueryInterval.java:24)	at htsjdk.samtools.SamReader$PrimitiveSamReaderToSamReaderAdapter.query(SamReader.java:503)	at picard.sam.ReorderSam.doWork(ReorderSam.java:124)	at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:209)	at picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:95)	at picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:105)