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via GitHub by dthach1
, 1 year ago
Invalid reference index -1
via GitHub by jrobinso
, 9 months ago
java.lang.IllegalArgumentException: Invalid reference index -1 at htsjdk.samtools.QueryInterval.<init>(QueryInterval.java:24) at htsjdk.samtools.SamReader$PrimitiveSamReaderToSamReaderAdapter.query(SamReader.java:503) at picard.sam.ReorderSam.doWork(ReorderSam.java:124) at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:209) at picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:95) at picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:105)