java.lang.OutOfMemoryError: Java heap space

Google Groups | Jim Robinson | 4 months ago
  1. 0

    Re: [igv-help] I am trying to convert MAF to SAM, but it runs into java error.

    Google Groups | 4 months ago | Jim Robinson
    java.lang.OutOfMemoryError: Java heap space
  2. 0

    Mahout runs out of heap space

    Stack Overflow | 6 years ago | crazyaboutliv
    java.lang.OutOfMemoryError: Java heap space
  3. 0

    java.lang.OutOfMemoryError: Java heap space - help

    Google Groups | 2 years ago | Grigoriy Shmigol
    java.lang.OutOfMemoryError: Java heap space
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  5. 0

    Gwt4nb: Wiki: WikiFiles2 — Project Kenai

    java.net | 1 year ago
    java.lang.OutOfMemoryError: Java heap space
  6. 0

    SLURM - OutOfMemoryError: GC overhead limit exceeded

    Stack Overflow | 4 years ago | markus
    java.lang.OutOfMemoryError: GC overhead limit exceeded at java.util.regex.Matcher.<init>(Matcher.java:207)

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    Root Cause Analysis

    1. java.lang.OutOfMemoryError

      Java heap space

      at java.util.Arrays.copyOfRange()
    2. Java RT
      Pattern.split
      1. java.util.Arrays.copyOfRange(Arrays.java:3664)
      2. java.lang.String.<init>(String.java:207)
      3. java.lang.String.substring(String.java:1969)
      4. java.lang.String.subSequence(String.java:2003)
      5. java.util.regex.Pattern.split(Pattern.java:1216)
      5 frames
    3. org.broad.igv
      IgvTools.main
      1. org.broad.igv.tools.sort.Parser.createRecord(Parser.java:85)
      2. org.broad.igv.tools.sort.Parser.readNextRecord(Parser.java:74)
      3. org.broad.igv.tools.sort.AsciiSorter.run(AsciiSorter.java:109)
      4. org.broad.igv.maf.MAFtoSAM.addSATags(MAFtoSAM.java:102)
      5. org.broad.igv.maf.MAFtoSAM.convert(MAFtoSAM.java:90)
      6. org.broad.igv.tools.IgvTools.run(IgvTools.java:455)
      7. org.broad.igv.tools.IgvTools.main(IgvTools.java:259)
      7 frames