Unable to merge temporary Tribble output file.

Solutions on the web3

  • Unable to merge temporary Tribble output file.
  • via by Unknown author, 11 months ago
    Unable to merge temporary Tribble output file.
  • via by Unknown author, 1 year ago
    Unable to write data to BAM schedule file.
  • Stack trace

    • org.broadinstitute.sting.utils.exceptions.ReviewedStingException: Unable to merge temporary Tribble output file. at org.broadinstitute.sting.gatk.executive.HierarchicalMicroScheduler.mergeExistingOutput( at org.broadinstitute.sting.gatk.executive.HierarchicalMicroScheduler.execute( at org.broadinstitute.sting.gatk.GenomeAnalysisEngine.execute( at org.broadinstitute.sting.gatk.CommandLineExecutable.execute( at org.broadinstitute.sting.commandline.CommandLineProgram.start( at org.broadinstitute.sting.commandline.CommandLineProgram.start( at org.broadinstitute.sting.gatk.CommandLineGATK.main( Caused by: org.broad.tribble.TribbleException$MalformedFeatureFile: Unable to parse header with error: /rd/tmp/ (Too many open files), for input source: /rd/tmp/ at org.broad.tribble.TribbleIndexedFeatureReader.readHeader( at org.broad.tribble.TribbleIndexedFeatureReader.<init>( at org.broad.tribble.AbstractFeatureReader.getFeatureReader( at at at org.broadinstitute.sting.gatk.executive.OutputMergeTask.merge( at org.broadinstitute.sting.gatk.executive.HierarchicalMicroScheduler.mergeExistingOutput( ... 6 more Caused by: /rd/tmp/ (Too many open files) at Method) at<init>( at org.broad.tribble.util.ParsingUtils.openInputStream( at org.broad.tribble.TribbleIndexedFeatureReader.readHeader( ... 12 more

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