org.quartz.SchedulerException: Job threw an unhandled exception. [See nested exception: com.atlassian.core.exception.InfrastructureException: org.springframework.dao.InvalidDataAccessApiUsageException: Write operations are not allowed in read-only mode (FlushMode.NEVER): Turn your Session into FlushMode.AUTO or remove 'readOnly' marker from transaction definition.]

Atlassian JIRA | Sashidaran Jayaraman [Atlassian] | 6 years ago
  1. 0

    h5. Steps to reproduce issue # Integrate Confluence with LDAP # Ensure a local user and an LDAP user have {{Subscribed to daily updates}} # Stop Confluence server # Remove the LDAP user straight in LDAP server # Start Confluence # The daily report will fail with the following error: {code} 2011-01-17 18:38:56,873 ERROR [DefaultQuartzScheduler_Worker-7] [org.quartz.core.ErrorLogger] schedulerError Job (DEFAULT.DailyReportJob threw an exception. org.quartz.SchedulerException: Job threw an unhandled exception. [See nested exception: com.atlassian.core.exception.InfrastructureException: org.springframework.dao.InvalidDataAccessApiUsageException: Write operations are not allowed in read-only mode (FlushMode.NEVER): Turn your Session into FlushMode.AUTO or remove 'readOnly' marker from transaction definition.] at org.quartz.core.JobRunShell.run(JobRunShell.java:210) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:549) Caused by: com.atlassian.core.exception.InfrastructureException: org.springframework.dao.InvalidDataAccessApiUsageException: Write operations are not allowed in read-only mode (FlushMode.NEVER): Turn your Session into FlushMode.AUTO or remove 'readOnly' marker from transaction definition. at com.atlassian.hibernate.HibernateObjectDao.remove(HibernateObjectDao.java:166) at com.atlassian.confluence.mail.notification.DefaultNotificationManager.removeNotification(DefaultNotificationManager.java:118) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:304) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at com.atlassian.spring.interceptors.SpringProfilingInterceptor.invoke(SpringProfilingInterceptor.java:16) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) at $Proxy26.removeNotification(Unknown Source) at com.atlassian.confluence.mail.ChangeDigestNotificationBean.getAllChangeReports(ChangeDigestNotificationBean.java:176) at com.atlassian.confluence.mail.jobs.DefaultDailyReportManager.generateDailyReports(DefaultDailyReportManager.java:51) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) .. .. .. Caused by: org.springframework.dao.InvalidDataAccessApiUsageException: Write operations are not allowed in read-only mode (FlushMode.NEVER): Turn your Session into FlushMode.AUTO or remove 'readOnly' marker from transaction definition. at org.springframework.orm.hibernate.HibernateTemplate.checkWriteOperationAllowed(HibernateTemplate.java:1000) at org.springframework.orm.hibernate.HibernateTemplate$16.doInHibernate(HibernateTemplate.java:650) at org.springframework.orm.hibernate.HibernateTemplate.execute(HibernateTemplate.java:370) at org.springframework.orm.hibernate.HibernateTemplate.delete(HibernateTemplate.java:648) at org.springframework.orm.hibernate.HibernateTemplate.delete(HibernateTemplate.java:644) at com.atlassian.hibernate.HibernateObjectDao.remove(HibernateObjectDao.java:160) ... 38 more ~ {code} h5. Findings In Confluence 2.10.3 and 3.3.1, this does not take place because of the following: {code} 2011-01-17 18:19:16,804 WARN [DefaultQuartzScheduler_Worker-6] [atlassian.confluence.mail.ChangeDigestNotificationBean] getAllChangeReports User Test not found for notification com.atlassian.confluence.mail.notification.Notification@110002 (removing notification) {code} h3. Workaround for 3.4.x # Unzip [^CONF-21645-fix.zip] into WEB-INF # Make sure the following exists in your Confluence installation directory #* {{confluence-install/confluence/WEB-INF/classes/com/atlassian/confluence/mail/ChangeDigestNotificationBean.class}} # Restart Confluence

    Atlassian JIRA | 6 years ago | Sashidaran Jayaraman [Atlassian]
    org.quartz.SchedulerException: Job threw an unhandled exception. [See nested exception: com.atlassian.core.exception.InfrastructureException: org.springframework.dao.InvalidDataAccessApiUsageException: Write operations are not allowed in read-only mode (FlushMode.NEVER): Turn your Session into FlushMode.AUTO or remove 'readOnly' marker from transaction definition.]
  2. 0

    h5. Steps to reproduce issue # Integrate Confluence with LDAP # Ensure a local user and an LDAP user have {{Subscribed to daily updates}} # Stop Confluence server # Remove the LDAP user straight in LDAP server # Start Confluence # The daily report will fail with the following error: {code} 2011-01-17 18:38:56,873 ERROR [DefaultQuartzScheduler_Worker-7] [org.quartz.core.ErrorLogger] schedulerError Job (DEFAULT.DailyReportJob threw an exception. org.quartz.SchedulerException: Job threw an unhandled exception. [See nested exception: com.atlassian.core.exception.InfrastructureException: org.springframework.dao.InvalidDataAccessApiUsageException: Write operations are not allowed in read-only mode (FlushMode.NEVER): Turn your Session into FlushMode.AUTO or remove 'readOnly' marker from transaction definition.] at org.quartz.core.JobRunShell.run(JobRunShell.java:210) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:549) Caused by: com.atlassian.core.exception.InfrastructureException: org.springframework.dao.InvalidDataAccessApiUsageException: Write operations are not allowed in read-only mode (FlushMode.NEVER): Turn your Session into FlushMode.AUTO or remove 'readOnly' marker from transaction definition. at com.atlassian.hibernate.HibernateObjectDao.remove(HibernateObjectDao.java:166) at com.atlassian.confluence.mail.notification.DefaultNotificationManager.removeNotification(DefaultNotificationManager.java:118) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:304) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at com.atlassian.spring.interceptors.SpringProfilingInterceptor.invoke(SpringProfilingInterceptor.java:16) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) at $Proxy26.removeNotification(Unknown Source) at com.atlassian.confluence.mail.ChangeDigestNotificationBean.getAllChangeReports(ChangeDigestNotificationBean.java:176) at com.atlassian.confluence.mail.jobs.DefaultDailyReportManager.generateDailyReports(DefaultDailyReportManager.java:51) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) .. .. .. Caused by: org.springframework.dao.InvalidDataAccessApiUsageException: Write operations are not allowed in read-only mode (FlushMode.NEVER): Turn your Session into FlushMode.AUTO or remove 'readOnly' marker from transaction definition. at org.springframework.orm.hibernate.HibernateTemplate.checkWriteOperationAllowed(HibernateTemplate.java:1000) at org.springframework.orm.hibernate.HibernateTemplate$16.doInHibernate(HibernateTemplate.java:650) at org.springframework.orm.hibernate.HibernateTemplate.execute(HibernateTemplate.java:370) at org.springframework.orm.hibernate.HibernateTemplate.delete(HibernateTemplate.java:648) at org.springframework.orm.hibernate.HibernateTemplate.delete(HibernateTemplate.java:644) at com.atlassian.hibernate.HibernateObjectDao.remove(HibernateObjectDao.java:160) ... 38 more ~ {code} h5. Findings In Confluence 2.10.3 and 3.3.1, this does not take place because of the following: {code} 2011-01-17 18:19:16,804 WARN [DefaultQuartzScheduler_Worker-6] [atlassian.confluence.mail.ChangeDigestNotificationBean] getAllChangeReports User Test not found for notification com.atlassian.confluence.mail.notification.Notification@110002 (removing notification) {code} h3. Workaround for 3.4.x # Unzip [^CONF-21645-fix.zip] into WEB-INF # Make sure the following exists in your Confluence installation directory #* {{confluence-install/confluence/WEB-INF/classes/com/atlassian/confluence/mail/ChangeDigestNotificationBean.class}} # Restart Confluence

    Atlassian JIRA | 6 years ago | Sashidaran Jayaraman [Atlassian]
    org.quartz.SchedulerException: Job threw an unhandled exception. [See nested exception: com.atlassian.core.exception.InfrastructureException: org.springframework.dao.InvalidDataAccessApiUsageException: Write operations are not allowed in read-only mode (FlushMode.NEVER): Turn your Session into FlushMode.AUTO or remove 'readOnly' marker from transaction definition.]
  3. 0

    /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/bin/java -Dcatalina.home=/Users/jpendleton/dev/tomcat -Dcatalina.base=tomcat -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager -Xms256m -Xmx512m -Djira.i18n.texthighlight=false -Dmail.debug=false -Djira.jelly.on=true -Datlassian.mail.senddisabled=true -Datlassian.mail.popdisabled=true -Djira.trackback.senddisabled=true -Dfile.encoding=MacRoman -classpath /Users/jpendleton/src/atlassian/jira/modules/tomcat_env: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/deploy.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/dt.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/javaws.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/jce.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/plugin.jar: 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/Users/jpendleton/.maven/repository/atlassian-profiling/jars/atlassian-profiling-1.1.4.jar: /Users/jpendleton/.maven/repository/com.atlassian.jdk.utilities/jars/atlassian-jdk-utilities-0.3.jar: /Users/jpendleton/.maven/repository/com.atlassian.configurableobjects/jars/atlassian-configurableobjects-0.9.jar: /Users/jpendleton/.maven/repository/atlassian-mail/jars/atlassian-mail-1.5.jar: /Users/jpendleton/.maven/repository/atlassian-scheduler/jars/atlassian-scheduler-2007-04-05.jar: /Users/jpendleton/.maven/repository/com.atlassian.velocity/jars/atlassian-velocity-0.8.jar: /Users/jpendleton/.maven/repository/atlassian-johnson/jars/atlassian-johnson-0.10.jar: /Users/jpendleton/.maven/repository/atlassian-cache-servlet/jars/atlassian-cache-servlet-0.5.4.jar: /Users/jpendleton/.maven/repository/com.atlassian.plugins/jars/atlassian-plugins-0.23.jar: /Users/jpendleton/.maven/repository/com.atlassian.seraph/jars/atlassian-seraph-0.38.jar: 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/Users/jpendleton/.maven/repository/sitemesh/jars/sitemesh-2.3-dev-25Oct-05.jar: /Users/jpendleton/.maven/repository/webwork/jars/webwork-17Jan08-jiratld.jar: /Users/jpendleton/.maven/repository/webwork/jars/pell-multipart-request-1.31.0.jar: /Users/jpendleton/.maven/repository/commons-digester/jars/commons-digester-1.4.1.jar: /Users/jpendleton/.maven/repository/commons-beanutils/jars/commons-beanutils-1.6.1.jar: /Users/jpendleton/.maven/repository/commons-logging/jars/commons-logging-1.0.4.jar: /Users/jpendleton/.maven/repository/commons-collections/jars/commons-collections-3.2.jar: /Users/jpendleton/.maven/repository/commons-lang/jars/commons-lang-2.3.jar: /Users/jpendleton/.maven/repository/commons-configuration/jars/commons-configuration-1.0.jar: /Users/jpendleton/.maven/repository/log4j/jars/log4j-1.2.7.jar: /Users/jpendleton/.maven/repository/lucene/jars/lucene-core-2.2.0.jar: /Users/jpendleton/.maven/repository/lucene/jars/lucene-analyzers-2.2.0.jar: 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/Users/jpendleton/.maven/repository/axis/jars/axis-jaxrpc-1.3.jar: /Users/jpendleton/.maven/repository/axis/jars/axis-saaj-1.3.jar: /Users/jpendleton/.maven/repository/axis/jars/axis-wsdl4j-1.5.1.jar: /Users/jpendleton/.maven/repository/commons-discovery/jars/commons-discovery-0.2.jar: /Users/jpendleton/.maven/repository/xerces/jars/xercesImpl-2.6.2.jar: /Users/jpendleton/.maven/repository/xml-security/jars/xmlsec-1.1.0.jar: /Users/jpendleton/.maven/repository/datafile/jars/datafile-1.3.3.jar: /Users/jpendleton/.maven/repository/xpp3/jars/xpp3-1.1.3.4-RC8.jar: /Users/jpendleton/.maven/repository/xstream/jars/xstream-1.1.1.jar: /Users/jpendleton/.maven/repository/jfreechart/jars/jfreechart-1.0.4.jar: /Users/jpendleton/.maven/repository/jfree/jars/jcommon-1.0.8.jar: /Users/jpendleton/.maven/repository/net.java.dev.urlrewrite/jars/urlrewrite-2.5.2.jar: /Users/jpendleton/.maven/repository/radeox/jars/radeox-1.0b2-forked-22Apr2004.jar: /Users/jpendleton/.maven/repository/jtidy/jars/jtidy-r8-20050104.jar: /Users/jpendleton/.maven/repository/jdom/jars/jdom-1.0.jar: /Users/jpendleton/.maven/repository/com.atlassian.crowd/jars/crowd-integration-client-1.3.jar: /Users/jpendleton/.maven/repository/ehcache/jars/ehcache-1.2.3.jar: /Users/jpendleton/.maven/repository/org.codehaus.xfire/jars/xfire-core-1.2.6.jar: /Users/jpendleton/.maven/repository/org.codehaus.xfire/jars/xfire-aegis-1.2.6.jar: /Users/jpendleton/.maven/repository/wsdl4j/jars/wsdl4j-1.6.1.jar: /Users/jpendleton/.maven/repository/stax/jars/stax-api-1.0.1.jar: /Users/jpendleton/.maven/repository/woodstox/jars/wstx-asl-3.2.4.jar: /Users/jpendleton/.maven/repository/com.atlassian.p4package/jars/atlassian-p4package-2007.12.14.jar: /Users/jpendleton/.maven/repository/com.atlassian.modzdetector/jars/modz-detector-0.3.jar: /Users/jpendleton/src/atlassian/jira/src/java: /Users/jpendleton/src/atlassian/jira/src/webapp/WEB-INF/classes: /Users/jpendleton/src/atlassian/jira/src/etc/jelly: /Users/jpendleton/src/atlassian/jira/src/etc/ofbiz: /Users/jpendleton/src/atlassian/jira/src/etc/java: /Users/jpendleton/src/atlassian/jira/src/etc/eventtypes: /Users/jpendleton/src/atlassian/jira/src/etc/upgrade: /Users/jpendleton/src/atlassian/jira/src/etc/osworkflow: /Users/jpendleton/src/atlassian/jira/src/etc/notifications: /Users/jpendleton/src/atlassian/jira/src/etc/languages/zh_CN: /Users/jpendleton/src/atlassian/jira/src/etc/languages/en_UK: /Users/jpendleton/src/atlassian/jira/src/etc/languages/de_CH: /Users/jpendleton/src/atlassian/jira/src/etc/languages/it_IT: /Users/jpendleton/src/atlassian/jira/src/etc/languages/de_DE: /Users/jpendleton/src/atlassian/jira/src/etc/languages/hu_HU: /Users/jpendleton/src/atlassian/jira/src/etc/languages/ru_RU: /Users/jpendleton/src/atlassian/jira/src/etc/languages/es_ES: /Users/jpendleton/src/atlassian/jira/src/etc/languages/default: /Users/jpendleton/src/atlassian/jira/src/etc/languages/cs_CZ: /Users/jpendleton/src/atlassian/jira/src/etc/languages/sk_SK: /Users/jpendleton/src/atlassian/jira/src/etc/languages/zh_TW: /Users/jpendleton/src/atlassian/jira/src/etc/languages/pt_BR: /Users/jpendleton/src/atlassian/jira/src/etc/languages/no_NO: /Users/jpendleton/src/atlassian/jira/src/etc/languages/fr_FR: /Users/jpendleton/src/atlassian/jira/src/etc/languages/pl_PL: /Users/jpendleton/src/atlassian/jira/src/etc/test: /Users/jpendleton/src/atlassian/jira/src/etc/languages/ja_JP: /Users/jpendleton/src/atlassian/jira/src/etc/languages/nl_BE: /Users/jpendleton/src/atlassian/jira/src/etc/languages/tr_TR: /Users/jpendleton/src/atlassian/jira/src/etc/languages/da_DK: /Users/jpendleton/src/atlassian/modz-detector/target/classes: /Users/jpendleton/.m2/repository/log4j/log4j/1.2.7/log4j-1.2.7.jar: /Users/jpendleton/.m2/repository/commons-codec/commons-codec/1.3/commons-codec-1.3.jar: /Users/jpendleton/.m2/repository/ant/ant/1.5.4/ant-1.5.4.jar: /Users/jpendleton/.m2/repository/junit/junit/3.8.1/junit-3.8.1.jar: /Users/jpendleton/.m2/repository/easymock/easymock/1.2_Java1.3/easymock-1.2_Java1.3.jar: /Users/jpendleton/.m2/repository/cglib/cglib-full/2.0.1/cglib-full-2.0.1.jar: /Users/jpendleton/.m2/repository/easymock/easymockclassextension/1.2.1/easymockclassextension-1.2.1.jar: /Users/jpendleton/.m2/repository/backport-util-concurrent/backport-util-concurrent/3.1/backport-util-concurrent-3.1.jar: /Users/jpendleton/src/atlassian/jira/target/classes: /Users/jpendleton/.maven/repository/com.atlassian.extras/jars/atlassian-extras-1.12.jar: /Users/jpendleton/.maven/repository/com.atlassian.plugins/jars/atlassian-plugins-0.20.jar: /Users/jpendleton/.maven/repository/atlassian-ofbiz/jars/atlassian-ofbiz-0.3.8.jar: /Users/jpendleton/.maven/repository/webwork/jars/webwork-30Apr07-jiratld.jar: /Users/jpendleton/.maven/repository/atlassian-core/jars/atlassian-core-2007-04-23.jar: /Users/jpendleton/.maven/repository/commons-lang/jars/commons-lang-2.1.jar: /Users/jpendleton/.maven/repository/jmock/jars/jmock-1.0.1.jar: /Users/jpendleton/.maven/repository/ofbcore/jars/ofbcore-share-2.1.1.jar: /Users/jpendleton/.maven/repository/ofbcore/jars/ofbcore-entity-2.1.1-atlassian-2007-05-07.jar: /Users/jpendleton/.maven/repository/oscore/jars/oscore-2.2.6-dev-9Nov05.jar: /Users/jpendleton/.maven/repository/atlassian-johnson/jars/atlassian-johnson-2007-06-01.jar: /Users/jpendleton/.maven/repository/com.atlassian.configurableobjects/jars/atlassian-configurableobjects-0.7.jar: /Users/jpendleton/.maven/repository/com.atlassian.seraph/jars/atlassian-seraph-0.30.jar: /Users/jpendleton/src/atlassian/rpc-jira-plugin/src/etc/java: /Users/jpendleton/src/atlassian/rpc-jira-plugin/src/test/etc: /Users/jpendleton/src/atlassian/rpc-jira-plugin/target/classes org.apache.catalina.startup.Bootstrap start {code} 2008-07-23 09:31:28,657 main INFO [atlassian.jira.startup.JiraStartupLogger] **************** JIRA starting... **************** 2008-07-23 09:31:28,674 main INFO [atlassian.jira.startup.JiraStartupLogger] ___ Environment ___________________ JIRA Build : Professional Edition, Version: 4.0-SNAPSHOT-#327 JIRA Installation Type : Source Application Server : Apache Tomcat/5.5.26 - Servlet API 2.4 Java Version : 1.5.0_13 - Apple Inc. Current Working Directory : /Users/jpendleton/src/atlassian/jira Maximum Allowable Memory : 508MB Total Memory : 254MB Free Memory : 244MB Used Memory : 10MB Total PermGen Memory : 116MB Free PermGen Memory : 99MB Used PermGen Memory : 16MB JVM Input Arguments : -Dcatalina.home=/Users/jpendleton/dev/tomcat -Dcatalina.base=tomcat -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager -Xms256m -Xmx512m -Djira.i18n.texthighlight=false -Dmail.debug=false -Djira.jelly.on=true -Datlassian.mail.senddisabled=true -Datlassian.mail.popdisabled=true -Djira.trackback.senddisabled=true -Dfile.encoding=MacRoman ___ Java System Properties _______ atlassian.mail.popdisabled : true atlassian.mail.senddisabled : true awt.nativeDoubleBuffering : true awt.toolkit : apple.awt.CToolkit catalina.base : /Users/jpendleton/src/atlassian/jira/tomcat catalina.home : /Users/jpendleton/dev/tomcat catalina.useNaming : true common.loader : ${catalina.home}/common/classes, ${catalina.home}/common/i18n/*.jar, ${catalina.home}/common/endorsed/*.jar, ${catalina.home}/common/lib/*.jar file.encoding : MacRoman file.encoding.pkg : sun.io ftp.nonProxyHosts : local|*.local|169.254/16|*.169.254/16 gopherProxySet : false http.nonProxyHosts : local|*.local|169.254/16|*.169.254/16 java.awt.graphicsenv : apple.awt.CGraphicsEnvironment java.awt.printerjob : apple.awt.CPrinterJob java.class.version : 49.0 java.home : /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home java.io.tmpdir : /tmp java.naming.factory.initial : org.apache.naming.java.javaURLContextFactory java.naming.factory.url.pkgs : org.apache.naming java.runtime.name : Java(TM) 2 Runtime Environment, Standard Edition java.runtime.version : 1.5.0_13-b05-237 java.specification.name : Java Platform API Specification java.specification.vendor : Sun Microsystems Inc. java.specification.version : 1.5 java.util.logging.manager : org.apache.juli.ClassLoaderLogManager java.vendor : Apple Inc. java.vendor.url : http://www.apple.com/ java.vendor.url.bug : http://bugreport.apple.com/ java.version : 1.5.0_13 java.vm.info : mixed mode, sharing java.vm.name : Java HotSpot(TM) Client VM java.vm.specification.name : Java Virtual Machine Specification java.vm.specification.vendor : Sun Microsystems Inc. java.vm.specification.version : 1.0 java.vm.vendor : Apple Inc. java.vm.version : 1.5.0_13-119 jira.i18n.texthighlight : false jira.jelly.on : true jira.trackback.senddisabled : true mail.debug : false mrj.version : 1040.1.5.0_13-237 os.arch : i386 os.name : Mac OS X os.version : 10.5.4 package.access : sun., org.apache.catalina., org.apache.coyote., org.apache.tomcat., org.apache.jasper., sun.beans. package.definition : sun., java., org.apache.catalina., org.apache.coyote., org.apache.tomcat., org.apache.jasper. server.loader : ${catalina.home}/server/classes, ${catalina.home}/server/lib/*.jar shared.loader : ${catalina.base}/shared/classes, ${catalina.base}/shared/lib/*.jar socksNonProxyHosts : local|*.local|169.254/16|*.169.254/16 sun.arch.data.model : 32 sun.boot.library.path : /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries sun.cpu.endian : little sun.cpu.isalist : sun.io.unicode.encoding : UnicodeLittle sun.java.launcher : SUN_STANDARD sun.jnu.encoding : MacRoman sun.management.compiler : HotSpot Client Compiler sun.os.patch.level : unknown tomcat.util.buf.StringCache.byte.enabled : true user.country : US user.dir : /Users/jpendleton/src/atlassian/jira user.home : /Users/jpendleton user.language : en user.name : jpendleton user.timezone : Australia/Sydney 2008-07-23 09:31:29,141 main INFO [atlassian.jira.startup.JiraStartupLogger] Database configuration OK ___ Database Configuration _______ Loading entityengine.xml from : file:/Users/jpendleton/src/atlassian/jira/src/webapp/WEB-INF/classes/entityengine.xml Entity model data source name : defaultDS Entity model field type name : postgres72 Entity model schema name : public Database Version : PostgreSQL - 8.2.5 Database Driver : PostgreSQL Native Driver - PostgreSQL 8.2 JDBC3 with SSL (build 506) Database URL : jdbc:postgresql://localhost/jira Database JNDI address : java:comp/env/jdbc/JiraDS 2008-07-23 09:31:31,362 main ERROR [com.atlassian.jira.ComponentManager] Error occurred while starting component. com.atlassian.core.exception.InfrastructureException: The plugin directory is not configured properly at com.atlassian.jira.plugin.DefaultPluginInstallationManager.uninstall(DefaultPluginInstallationManager.java:192) at com.atlassian.jira.plugin.JiraPluginManager.uninstall(JiraPluginManager.java:45) at com.atlassian.plugin.DefaultPluginManager.updatePlugin(DefaultPluginManager.java:330) at com.atlassian.plugin.DefaultPluginManager.addPlugin(DefaultPluginManager.java:287) at com.atlassian.jira.plugin.JiraPluginManager.addPlugin(JiraPluginManager.java:200) at com.atlassian.plugin.DefaultPluginManager.init(DefaultPluginManager.java:106) at com.atlassian.jira.plugin.JiraPluginManager.start(JiraPluginManager.java:34) at com.atlassian.jira.ComponentManager.quickStart(ComponentManager.java:398) at com.atlassian.jira.ComponentManager.start(ComponentManager.java:377) at com.atlassian.jira.upgrade.ConsistencyLauncher.contextInitialized(ConsistencyLauncher.java:42) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764) at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014) at org.apache.catalina.core.StandardHost.start(StandardHost.java:736) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014) at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443) at org.apache.catalina.core.StandardService.start(StandardService.java:448) at org.apache.catalina.core.StandardServer.start(StandardServer.java:700) at org.apache.catalina.startup.Catalina.start(Catalina.java:552) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:585) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433) 2008-07-23 09:31:31,364 main FATAL [atlassian.jira.upgrade.ConsistencyLauncher] A RuntimeException occurred during ConsistencyLauncher servlet context initialisation - Error occurred while starting component.. com.atlassian.jira.InfrastructureException: Error occurred while starting component. at com.atlassian.jira.ComponentManager.quickStart(ComponentManager.java:403) at com.atlassian.jira.ComponentManager.start(ComponentManager.java:377) at com.atlassian.jira.upgrade.ConsistencyLauncher.contextInitialized(ConsistencyLauncher.java:42) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764) at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014) at org.apache.catalina.core.StandardHost.start(StandardHost.java:736) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014) at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443) at org.apache.catalina.core.StandardService.start(StandardService.java:448) at org.apache.catalina.core.StandardServer.start(StandardServer.java:700) at org.apache.catalina.startup.Catalina.start(Catalina.java:552) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:585) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433) Caused by: com.atlassian.core.exception.InfrastructureException: The plugin directory is not configured properly at com.atlassian.jira.plugin.DefaultPluginInstallationManager.uninstall(DefaultPluginInstallationManager.java:192) at com.atlassian.jira.plugin.JiraPluginManager.uninstall(JiraPluginManager.java:45) at com.atlassian.plugin.DefaultPluginManager.updatePlugin(DefaultPluginManager.java:330) at com.atlassian.plugin.DefaultPluginManager.addPlugin(DefaultPluginManager.java:287) at com.atlassian.jira.plugin.JiraPluginManager.addPlugin(JiraPluginManager.java:200) at com.atlassian.plugin.DefaultPluginManager.init(DefaultPluginManager.java:106) at com.atlassian.jira.plugin.JiraPluginManager.start(JiraPluginManager.java:34) at com.atlassian.jira.ComponentManager.quickStart(ComponentManager.java:398) ... 17 more 2008-07-23 09:31:31,366 main ERROR [ContainerBase.[Standalone].[localhost].[/jira]] Exception sending context initialized event to listener instance of class com.atlassian.jira.upgrade.ConsistencyLauncher com.atlassian.jira.InfrastructureException: Error occurred while starting component. at com.atlassian.jira.ComponentManager.quickStart(ComponentManager.java:403) at com.atlassian.jira.ComponentManager.start(ComponentManager.java:377) at com.atlassian.jira.upgrade.ConsistencyLauncher.contextInitialized(ConsistencyLauncher.java:42) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764) at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014) at org.apache.catalina.core.StandardHost.start(StandardHost.java:736) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014) at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443) at org.apache.catalina.core.StandardService.start(StandardService.java:448) at org.apache.catalina.core.StandardServer.start(StandardServer.java:700) at org.apache.catalina.startup.Catalina.start(Catalina.java:552) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:585) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433) Caused by: com.atlassian.core.exception.InfrastructureException: The plugin directory is not configured properly at com.atlassian.jira.plugin.DefaultPluginInstallationManager.uninstall(DefaultPluginInstallationManager.java:192) at com.atlassian.jira.plugin.JiraPluginManager.uninstall(JiraPluginManager.java:45) at com.atlassian.plugin.DefaultPluginManager.updatePlugin(DefaultPluginManager.java:330) at com.atlassian.plugin.DefaultPluginManager.addPlugin(DefaultPluginManager.java:287) at com.atlassian.jira.plugin.JiraPluginManager.addPlugin(JiraPluginManager.java:200) at com.atlassian.plugin.DefaultPluginManager.init(DefaultPluginManager.java:106) at com.atlassian.jira.plugin.JiraPluginManager.start(JiraPluginManager.java:34) at com.atlassian.jira.ComponentManager.quickStart(ComponentManager.java:398) ... 17 more 2008-07-23 09:31:31,866 main ERROR [apache.catalina.core.StandardContext] Error listenerStart 2008-07-23 09:31:31,867 main ERROR [apache.catalina.core.StandardContext] Context [/jira] startup failed due to previous errors {code}

    Atlassian JIRA | 8 years ago | Justus Pendleton [Atlassian]
    com.atlassian.jira.InfrastructureException: Error occurred while starting component.
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    /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/bin/java -Dcatalina.home=/Users/jpendleton/dev/tomcat -Dcatalina.base=tomcat -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager -Xms256m -Xmx512m -Djira.i18n.texthighlight=false -Dmail.debug=false -Djira.jelly.on=true -Datlassian.mail.senddisabled=true -Datlassian.mail.popdisabled=true -Djira.trackback.senddisabled=true -Dfile.encoding=MacRoman -classpath /Users/jpendleton/src/atlassian/jira/modules/tomcat_env: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/deploy.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/dt.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/javaws.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/jce.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/plugin.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/sa-jdi.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/../Classes/charsets.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/../Classes/classes.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/../Classes/dt.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/../Classes/jce.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/../Classes/jconsole.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/../Classes/jsse.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/../Classes/laf.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/../Classes/ui.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/ext/apple_provider.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/ext/dnsns.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/ext/localedata.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/ext/sunjce_provider.jar: /System/Library/Frameworks/JavaVM.framework/Versions/CurrentJDK/Home/lib/ext/sunpkcs11.jar: /Users/jpendleton/dev/apache-tomcat-5.5.26/common/lib/servlet-api.jar: /Users/jpendleton/dev/apache-tomcat-5.5.26/common/lib/jsp-api.jar: /Users/jpendleton/dev/apache-tomcat-5.5.26/bin/commons-daemon.jar: /Users/jpendleton/dev/apache-tomcat-5.5.26/bin/bootstrap.jar: /Users/jpendleton/dev/apache-tomcat-5.5.26/bin/commons-logging-api.jar: /Users/jpendleton/dev/apache-tomcat-5.5.26/bin/tomcat-juli.jar: /Users/jpendleton/.maven/repository/com.atlassian.core/jars/atlassian-core-3.10.jar: /Users/jpendleton/.maven/repository/atlassian-bandana/jars/atlassian-bandana-0.1.13.jar: /Users/jpendleton/.maven/repository/com.atlassian.ofbiz/jars/atlassian-ofbiz-2.7.2.jar: /Users/jpendleton/.maven/repository/atlassian-profiling/jars/atlassian-profiling-1.1.4.jar: /Users/jpendleton/.maven/repository/com.atlassian.jdk.utilities/jars/atlassian-jdk-utilities-0.3.jar: /Users/jpendleton/.maven/repository/com.atlassian.configurableobjects/jars/atlassian-configurableobjects-0.9.jar: /Users/jpendleton/.maven/repository/atlassian-mail/jars/atlassian-mail-1.5.jar: /Users/jpendleton/.maven/repository/atlassian-scheduler/jars/atlassian-scheduler-2007-04-05.jar: /Users/jpendleton/.maven/repository/com.atlassian.velocity/jars/atlassian-velocity-0.8.jar: /Users/jpendleton/.maven/repository/atlassian-johnson/jars/atlassian-johnson-0.10.jar: /Users/jpendleton/.maven/repository/atlassian-cache-servlet/jars/atlassian-cache-servlet-0.5.4.jar: /Users/jpendleton/.maven/repository/com.atlassian.plugins/jars/atlassian-plugins-0.23.jar: /Users/jpendleton/.maven/repository/com.atlassian.seraph/jars/atlassian-seraph-0.38.jar: 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/Users/jpendleton/.maven/repository/jotm/jars/jotm-iiop_stubs-1.4.3.jar: /Users/jpendleton/.maven/repository/jotm/jars/jonas_timer-1.4.3.jar: /Users/jpendleton/.maven/repository/jotm/jars/objectweb-datasource-1.4.3.jar: /Users/jpendleton/.maven/repository/carol/jars/carol-1.5.2.jar: /Users/jpendleton/.maven/repository/carol/jars/carol-properties.jar: /Users/jpendleton/.maven/repository/xapool/jars/xapool-1.3.1.jar: /Users/jpendleton/.maven/repository/xml-apis/jars/xml-apis-1.0.b2.jar: /Users/jpendleton/.maven/repository/saxon/jars/saxon-noaelfred-6.5.5.jar: /Users/jpendleton/.maven/repository/commons-jelly/jars/commons-jelly-1.0.jar: /Users/jpendleton/.maven/repository/commons-jelly/jars/commons-jelly-tags-junit-1.0.jar: /Users/jpendleton/.maven/repository/commons-jelly/jars/commons-jelly-tags-util-1.1.1.jar: /Users/jpendleton/.maven/repository/commons-jelly/jars/commons-jelly-tags-email-1.0.jar: /Users/jpendleton/.maven/repository/commons-jelly/jars/commons-jelly-tags-log-1.0.jar: /Users/jpendleton/.maven/repository/commons-jelly/jars/commons-jelly-tags-http-1.0.jar: /Users/jpendleton/.maven/repository/commons-jelly/jars/commons-jelly-tags-soap-1.0.jar: /Users/jpendleton/.maven/repository/commons-jelly/jars/commons-jelly-tags-sql-1.0.jar: /Users/jpendleton/.maven/repository/commons-jelly/jars/commons-jelly-tags-regexp-1.0.jar: /Users/jpendleton/.maven/repository/commons-jexl/jars/commons-jexl-1.0.jar: /Users/jpendleton/.maven/repository/dom4j/jars/dom4j-1.4.jar: /Users/jpendleton/.maven/repository/atlassian-trackback/jars/atlassian-trackback-0.11.jar: /Users/jpendleton/.maven/repository/backport-util-concurrent/jars/backport-util-concurrent-3.1.jar: /Users/jpendleton/.maven/repository/commons-httpclient/jars/commons-httpclient-3.0.1.jar: /Users/jpendleton/.maven/repository/commons-codec/jars/commons-codec-1.3.jar: /Users/jpendleton/.maven/repository/xmlrpc/jars/xmlrpc-2.0.jar: /Users/jpendleton/.maven/repository/axis/jars/axis-1.3.jar: /Users/jpendleton/.maven/repository/axis/jars/axis-jaxrpc-1.3.jar: /Users/jpendleton/.maven/repository/axis/jars/axis-saaj-1.3.jar: /Users/jpendleton/.maven/repository/axis/jars/axis-wsdl4j-1.5.1.jar: /Users/jpendleton/.maven/repository/commons-discovery/jars/commons-discovery-0.2.jar: /Users/jpendleton/.maven/repository/xerces/jars/xercesImpl-2.6.2.jar: /Users/jpendleton/.maven/repository/xml-security/jars/xmlsec-1.1.0.jar: /Users/jpendleton/.maven/repository/datafile/jars/datafile-1.3.3.jar: /Users/jpendleton/.maven/repository/xpp3/jars/xpp3-1.1.3.4-RC8.jar: /Users/jpendleton/.maven/repository/xstream/jars/xstream-1.1.1.jar: /Users/jpendleton/.maven/repository/jfreechart/jars/jfreechart-1.0.4.jar: /Users/jpendleton/.maven/repository/jfree/jars/jcommon-1.0.8.jar: /Users/jpendleton/.maven/repository/net.java.dev.urlrewrite/jars/urlrewrite-2.5.2.jar: /Users/jpendleton/.maven/repository/radeox/jars/radeox-1.0b2-forked-22Apr2004.jar: /Users/jpendleton/.maven/repository/jtidy/jars/jtidy-r8-20050104.jar: /Users/jpendleton/.maven/repository/jdom/jars/jdom-1.0.jar: /Users/jpendleton/.maven/repository/com.atlassian.crowd/jars/crowd-integration-client-1.3.jar: /Users/jpendleton/.maven/repository/ehcache/jars/ehcache-1.2.3.jar: /Users/jpendleton/.maven/repository/org.codehaus.xfire/jars/xfire-core-1.2.6.jar: /Users/jpendleton/.maven/repository/org.codehaus.xfire/jars/xfire-aegis-1.2.6.jar: /Users/jpendleton/.maven/repository/wsdl4j/jars/wsdl4j-1.6.1.jar: /Users/jpendleton/.maven/repository/stax/jars/stax-api-1.0.1.jar: /Users/jpendleton/.maven/repository/woodstox/jars/wstx-asl-3.2.4.jar: /Users/jpendleton/.maven/repository/com.atlassian.p4package/jars/atlassian-p4package-2007.12.14.jar: /Users/jpendleton/.maven/repository/com.atlassian.modzdetector/jars/modz-detector-0.3.jar: /Users/jpendleton/src/atlassian/jira/src/java: /Users/jpendleton/src/atlassian/jira/src/webapp/WEB-INF/classes: 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/Users/jpendleton/.m2/repository/ant/ant/1.5.4/ant-1.5.4.jar: /Users/jpendleton/.m2/repository/junit/junit/3.8.1/junit-3.8.1.jar: /Users/jpendleton/.m2/repository/easymock/easymock/1.2_Java1.3/easymock-1.2_Java1.3.jar: /Users/jpendleton/.m2/repository/cglib/cglib-full/2.0.1/cglib-full-2.0.1.jar: /Users/jpendleton/.m2/repository/easymock/easymockclassextension/1.2.1/easymockclassextension-1.2.1.jar: /Users/jpendleton/.m2/repository/backport-util-concurrent/backport-util-concurrent/3.1/backport-util-concurrent-3.1.jar: /Users/jpendleton/src/atlassian/jira/target/classes: /Users/jpendleton/.maven/repository/com.atlassian.extras/jars/atlassian-extras-1.12.jar: /Users/jpendleton/.maven/repository/com.atlassian.plugins/jars/atlassian-plugins-0.20.jar: /Users/jpendleton/.maven/repository/atlassian-ofbiz/jars/atlassian-ofbiz-0.3.8.jar: /Users/jpendleton/.maven/repository/webwork/jars/webwork-30Apr07-jiratld.jar: /Users/jpendleton/.maven/repository/atlassian-core/jars/atlassian-core-2007-04-23.jar: /Users/jpendleton/.maven/repository/commons-lang/jars/commons-lang-2.1.jar: /Users/jpendleton/.maven/repository/jmock/jars/jmock-1.0.1.jar: /Users/jpendleton/.maven/repository/ofbcore/jars/ofbcore-share-2.1.1.jar: /Users/jpendleton/.maven/repository/ofbcore/jars/ofbcore-entity-2.1.1-atlassian-2007-05-07.jar: /Users/jpendleton/.maven/repository/oscore/jars/oscore-2.2.6-dev-9Nov05.jar: /Users/jpendleton/.maven/repository/atlassian-johnson/jars/atlassian-johnson-2007-06-01.jar: /Users/jpendleton/.maven/repository/com.atlassian.configurableobjects/jars/atlassian-configurableobjects-0.7.jar: /Users/jpendleton/.maven/repository/com.atlassian.seraph/jars/atlassian-seraph-0.30.jar: /Users/jpendleton/src/atlassian/rpc-jira-plugin/src/etc/java: /Users/jpendleton/src/atlassian/rpc-jira-plugin/src/test/etc: /Users/jpendleton/src/atlassian/rpc-jira-plugin/target/classes org.apache.catalina.startup.Bootstrap start {code} 2008-07-23 09:31:28,657 main INFO [atlassian.jira.startup.JiraStartupLogger] **************** JIRA starting... **************** 2008-07-23 09:31:28,674 main INFO [atlassian.jira.startup.JiraStartupLogger] ___ Environment ___________________ JIRA Build : Professional Edition, Version: 4.0-SNAPSHOT-#327 JIRA Installation Type : Source Application Server : Apache Tomcat/5.5.26 - Servlet API 2.4 Java Version : 1.5.0_13 - Apple Inc. Current Working Directory : /Users/jpendleton/src/atlassian/jira Maximum Allowable Memory : 508MB Total Memory : 254MB Free Memory : 244MB Used Memory : 10MB Total PermGen Memory : 116MB Free PermGen Memory : 99MB Used PermGen Memory : 16MB JVM Input Arguments : -Dcatalina.home=/Users/jpendleton/dev/tomcat -Dcatalina.base=tomcat -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager -Xms256m -Xmx512m -Djira.i18n.texthighlight=false -Dmail.debug=false -Djira.jelly.on=true -Datlassian.mail.senddisabled=true -Datlassian.mail.popdisabled=true -Djira.trackback.senddisabled=true -Dfile.encoding=MacRoman ___ Java System Properties _______ atlassian.mail.popdisabled : true atlassian.mail.senddisabled : true awt.nativeDoubleBuffering : true awt.toolkit : apple.awt.CToolkit catalina.base : /Users/jpendleton/src/atlassian/jira/tomcat catalina.home : /Users/jpendleton/dev/tomcat catalina.useNaming : true common.loader : ${catalina.home}/common/classes, ${catalina.home}/common/i18n/*.jar, ${catalina.home}/common/endorsed/*.jar, ${catalina.home}/common/lib/*.jar file.encoding : MacRoman file.encoding.pkg : sun.io ftp.nonProxyHosts : local|*.local|169.254/16|*.169.254/16 gopherProxySet : false http.nonProxyHosts : local|*.local|169.254/16|*.169.254/16 java.awt.graphicsenv : apple.awt.CGraphicsEnvironment java.awt.printerjob : apple.awt.CPrinterJob java.class.version : 49.0 java.home : /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home java.io.tmpdir : /tmp java.naming.factory.initial : org.apache.naming.java.javaURLContextFactory java.naming.factory.url.pkgs : org.apache.naming java.runtime.name : Java(TM) 2 Runtime Environment, Standard Edition java.runtime.version : 1.5.0_13-b05-237 java.specification.name : Java Platform API Specification java.specification.vendor : Sun Microsystems Inc. java.specification.version : 1.5 java.util.logging.manager : org.apache.juli.ClassLoaderLogManager java.vendor : Apple Inc. java.vendor.url : http://www.apple.com/ java.vendor.url.bug : http://bugreport.apple.com/ java.version : 1.5.0_13 java.vm.info : mixed mode, sharing java.vm.name : Java HotSpot(TM) Client VM java.vm.specification.name : Java Virtual Machine Specification java.vm.specification.vendor : Sun Microsystems Inc. java.vm.specification.version : 1.0 java.vm.vendor : Apple Inc. java.vm.version : 1.5.0_13-119 jira.i18n.texthighlight : false jira.jelly.on : true jira.trackback.senddisabled : true mail.debug : false mrj.version : 1040.1.5.0_13-237 os.arch : i386 os.name : Mac OS X os.version : 10.5.4 package.access : sun., org.apache.catalina., org.apache.coyote., org.apache.tomcat., org.apache.jasper., sun.beans. package.definition : sun., java., org.apache.catalina., org.apache.coyote., org.apache.tomcat., org.apache.jasper. server.loader : ${catalina.home}/server/classes, ${catalina.home}/server/lib/*.jar shared.loader : ${catalina.base}/shared/classes, ${catalina.base}/shared/lib/*.jar socksNonProxyHosts : local|*.local|169.254/16|*.169.254/16 sun.arch.data.model : 32 sun.boot.library.path : /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries sun.cpu.endian : little sun.cpu.isalist : sun.io.unicode.encoding : UnicodeLittle sun.java.launcher : SUN_STANDARD sun.jnu.encoding : MacRoman sun.management.compiler : HotSpot Client Compiler sun.os.patch.level : unknown tomcat.util.buf.StringCache.byte.enabled : true user.country : US user.dir : /Users/jpendleton/src/atlassian/jira user.home : /Users/jpendleton user.language : en user.name : jpendleton user.timezone : Australia/Sydney 2008-07-23 09:31:29,141 main INFO [atlassian.jira.startup.JiraStartupLogger] Database configuration OK ___ Database Configuration _______ Loading entityengine.xml from : file:/Users/jpendleton/src/atlassian/jira/src/webapp/WEB-INF/classes/entityengine.xml Entity model data source name : defaultDS Entity model field type name : postgres72 Entity model schema name : public Database Version : PostgreSQL - 8.2.5 Database Driver : PostgreSQL Native Driver - PostgreSQL 8.2 JDBC3 with SSL (build 506) Database URL : jdbc:postgresql://localhost/jira Database JNDI address : java:comp/env/jdbc/JiraDS 2008-07-23 09:31:31,362 main ERROR [com.atlassian.jira.ComponentManager] Error occurred while starting component. com.atlassian.core.exception.InfrastructureException: The plugin directory is not configured properly at com.atlassian.jira.plugin.DefaultPluginInstallationManager.uninstall(DefaultPluginInstallationManager.java:192) at com.atlassian.jira.plugin.JiraPluginManager.uninstall(JiraPluginManager.java:45) at com.atlassian.plugin.DefaultPluginManager.updatePlugin(DefaultPluginManager.java:330) at com.atlassian.plugin.DefaultPluginManager.addPlugin(DefaultPluginManager.java:287) at com.atlassian.jira.plugin.JiraPluginManager.addPlugin(JiraPluginManager.java:200) at com.atlassian.plugin.DefaultPluginManager.init(DefaultPluginManager.java:106) at com.atlassian.jira.plugin.JiraPluginManager.start(JiraPluginManager.java:34) at com.atlassian.jira.ComponentManager.quickStart(ComponentManager.java:398) at com.atlassian.jira.ComponentManager.start(ComponentManager.java:377) at com.atlassian.jira.upgrade.ConsistencyLauncher.contextInitialized(ConsistencyLauncher.java:42) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764) at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014) at org.apache.catalina.core.StandardHost.start(StandardHost.java:736) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014) at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443) at org.apache.catalina.core.StandardService.start(StandardService.java:448) at org.apache.catalina.core.StandardServer.start(StandardServer.java:700) at org.apache.catalina.startup.Catalina.start(Catalina.java:552) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:585) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433) 2008-07-23 09:31:31,364 main FATAL [atlassian.jira.upgrade.ConsistencyLauncher] A RuntimeException occurred during ConsistencyLauncher servlet context initialisation - Error occurred while starting component.. com.atlassian.jira.InfrastructureException: Error occurred while starting component. at com.atlassian.jira.ComponentManager.quickStart(ComponentManager.java:403) at com.atlassian.jira.ComponentManager.start(ComponentManager.java:377) at com.atlassian.jira.upgrade.ConsistencyLauncher.contextInitialized(ConsistencyLauncher.java:42) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764) at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014) at org.apache.catalina.core.StandardHost.start(StandardHost.java:736) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014) at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443) at org.apache.catalina.core.StandardService.start(StandardService.java:448) at org.apache.catalina.core.StandardServer.start(StandardServer.java:700) at org.apache.catalina.startup.Catalina.start(Catalina.java:552) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:585) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433) Caused by: com.atlassian.core.exception.InfrastructureException: The plugin directory is not configured properly at com.atlassian.jira.plugin.DefaultPluginInstallationManager.uninstall(DefaultPluginInstallationManager.java:192) at com.atlassian.jira.plugin.JiraPluginManager.uninstall(JiraPluginManager.java:45) at com.atlassian.plugin.DefaultPluginManager.updatePlugin(DefaultPluginManager.java:330) at com.atlassian.plugin.DefaultPluginManager.addPlugin(DefaultPluginManager.java:287) at com.atlassian.jira.plugin.JiraPluginManager.addPlugin(JiraPluginManager.java:200) at com.atlassian.plugin.DefaultPluginManager.init(DefaultPluginManager.java:106) at com.atlassian.jira.plugin.JiraPluginManager.start(JiraPluginManager.java:34) at com.atlassian.jira.ComponentManager.quickStart(ComponentManager.java:398) ... 17 more 2008-07-23 09:31:31,366 main ERROR [ContainerBase.[Standalone].[localhost].[/jira]] Exception sending context initialized event to listener instance of class com.atlassian.jira.upgrade.ConsistencyLauncher com.atlassian.jira.InfrastructureException: Error occurred while starting component. at com.atlassian.jira.ComponentManager.quickStart(ComponentManager.java:403) at com.atlassian.jira.ComponentManager.start(ComponentManager.java:377) at com.atlassian.jira.upgrade.ConsistencyLauncher.contextInitialized(ConsistencyLauncher.java:42) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764) at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014) at org.apache.catalina.core.StandardHost.start(StandardHost.java:736) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014) at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443) at org.apache.catalina.core.StandardService.start(StandardService.java:448) at org.apache.catalina.core.StandardServer.start(StandardServer.java:700) at org.apache.catalina.startup.Catalina.start(Catalina.java:552) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:585) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433) Caused by: com.atlassian.core.exception.InfrastructureException: The plugin directory is not configured properly at com.atlassian.jira.plugin.DefaultPluginInstallationManager.uninstall(DefaultPluginInstallationManager.java:192) at com.atlassian.jira.plugin.JiraPluginManager.uninstall(JiraPluginManager.java:45) at com.atlassian.plugin.DefaultPluginManager.updatePlugin(DefaultPluginManager.java:330) at com.atlassian.plugin.DefaultPluginManager.addPlugin(DefaultPluginManager.java:287) at com.atlassian.jira.plugin.JiraPluginManager.addPlugin(JiraPluginManager.java:200) at com.atlassian.plugin.DefaultPluginManager.init(DefaultPluginManager.java:106) at com.atlassian.jira.plugin.JiraPluginManager.start(JiraPluginManager.java:34) at com.atlassian.jira.ComponentManager.quickStart(ComponentManager.java:398) ... 17 more 2008-07-23 09:31:31,866 main ERROR [apache.catalina.core.StandardContext] Error listenerStart 2008-07-23 09:31:31,867 main ERROR [apache.catalina.core.StandardContext] Context [/jira] startup failed due to previous errors {code}

    Atlassian JIRA | 8 years ago | Justus Pendleton [Atlassian]
    com.atlassian.core.exception.InfrastructureException: The plugin directory is not configured properly
  6. 0

    When using SQL Server, currently the data type used for PERMTYPE, PERMGROUPNAME, PERMUSERNAME columns in the SPACEPERMISSIONS table is {{nvarchar(255)}}. This data type has a size of 510 bytes, which will cause a problem when creating an admin user for the first time during installation _when using ODBC database driver_: {code} com.atlassian.core.exception.InfrastructureException: Failed to create admin user at com.atlassian.confluence.setup.actions.SetupAdministrator.createAdmin(SetupAdministrator.java:102) caused by: com.atlassian.core.exception.InfrastructureException: com.atlassian.user.impl.RepositoryException: org.springframework.jdbc.BadSqlGrammarException: Hibernate operation: could not insert: [com.atlassian.confluence.security.SpacePermission#65544]; bad SQL grammar []; nested exception is java.sql.SQLException: [Microsoft][ODBC SQL Server Driver][SQL Server]Operation failed. The index entry of length 1020 bytes for the index 'sp_comp_idx' exceeds the maximum length of 900 bytes. at bucket.user.DefaultUserAccessor.addUser(DefaultUserAccessor.java:102) {code} The reason why it failed was due to the 3 columns indexed by {{sp_comp_idx}}: (PERMTYPE,PERMGROUPNAME,PERMUSERNAME) each has a size of 510 bytes. When creating an admin for the first time, only two columns have values hence the size of the row that needs to be indexed is 510+510+0 = 1020 bytes, which is larger than the 900 bytes size limit set in SQL Server. Note that the third column is null hence it contains 0 bytes. It appears that ODBC driver will try to add extra white space padding to the insert query: {code} insert into SPACEPERMISSIONS (SPACEID, PERMTYPE, PERMGROUPNAME, PERMUSERNAME, CREATOR, CREATIONDATE, LASTMODIFIER, LASTMODDATE, PERMID) values (NULL,'USECONFLUENCE ','confluence-users ',NULL,NULL,'2010-07-14 20:12:39:150',NULL,'2010-07-14 20:12:39:150',65537); {code} When JTDS driver is used, the installation works fine - because the insert query does not add the extra white space padding. This will not happen if we have set the data type to something smaller so the index size will be smaller than 900 bytes.

    Atlassian JIRA | 6 years ago | Roy Hartono [Atlassian]
    com.atlassian.core.exception.InfrastructureException: com.atlassian.user.impl.RepositoryException: org.springframework.jdbc.BadSqlGrammarException: Hibernate operation: could not insert: [com.atlassian.confluence.security.SpacePermission#65544]; bad SQL grammar []; nested exception is java.sql.SQLException: [Microsoft][ODBC SQL Server Driver][SQL Server]Operation failed. The index entry of length 1020 bytes for the index 'sp_comp_idx' exceeds the maximum length of 900 bytes.

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    Root Cause Analysis

    1. com.atlassian.core.exception.InfrastructureException

      org.springframework.dao.InvalidDataAccessApiUsageException: Write operations are not allowed in read-only mode (FlushMode.NEVER): Turn your Session into FlushMode.AUTO or remove 'readOnly' marker from transaction definition.

      at com.atlassian.hibernate.HibernateObjectDao.remove()
    2. com.atlassian.hibernate
      HibernateObjectDao.remove
      1. com.atlassian.hibernate.HibernateObjectDao.remove(HibernateObjectDao.java:166)
      1 frame
    3. com.atlassian.confluence
      DefaultNotificationManager.removeNotification
      1. com.atlassian.confluence.mail.notification.DefaultNotificationManager.removeNotification(DefaultNotificationManager.java:118)
      1 frame
    4. Java RT
      Method.invoke
      1. sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
      2. sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
      3. sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
      4. java.lang.reflect.Method.invoke(Method.java:597)
      4 frames
    5. Spring AOP
      ReflectiveMethodInvocation.proceed
      1. org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:304)
      2. org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182)
      3. org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149)
      3 frames
    6. Spring Tx
      TransactionInterceptor.invoke
      1. org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106)
      1 frame
    7. Spring AOP
      ReflectiveMethodInvocation.proceed
      1. org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
      1 frame
    8. com.atlassian.spring
      SpringProfilingInterceptor.invoke
      1. com.atlassian.spring.interceptors.SpringProfilingInterceptor.invoke(SpringProfilingInterceptor.java:16)
      1 frame
    9. Spring AOP
      JdkDynamicAopProxy.invoke
      1. org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
      2. org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
      2 frames
    10. Unknown
      $Proxy26.removeNotification
      1. $Proxy26.removeNotification(Unknown Source)
      1 frame
    11. com.atlassian.confluence
      DefaultDailyReportManager.generateDailyReports
      1. com.atlassian.confluence.mail.ChangeDigestNotificationBean.getAllChangeReports(ChangeDigestNotificationBean.java:176)
      2. com.atlassian.confluence.mail.jobs.DefaultDailyReportManager.generateDailyReports(DefaultDailyReportManager.java:51)
      2 frames
    12. Java RT
      Method.invoke
      1. sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
      2. sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
      3. sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
      4. java.lang.reflect.Method.invoke(Method.java:597)
      4 frames