java.lang.StringIndexOutOfBoundsException: String index out of range: 1

GitHub | leon8889 | 4 months ago
  1. 0

    StringIndexOutOfBoundsException: String index out of range: 1

    GitHub | 4 months ago | leon8889
    java.lang.StringIndexOutOfBoundsException: String index out of range: 1
  2. 0

    java.lang.StringIndexOutOfBoundsException

    GitHub | 2 years ago | ltfang-bina
    java.lang.StringIndexOutOfBoundsException: String index out of range: -1
  3. 0

    java.lang.StringIndexOutOfBoundsException

    GitHub | 2 years ago | ltfang-bina
    java.lang.StringIndexOutOfBoundsException: String index out of range: -1
  4. Speed up your debug routine!

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  5. 0

    CIGAR string parsing issues with alignments from bwa mem 0.7.12

    GitHub | 2 years ago | chapmanb
    java.lang.StringIndexOutOfBoundsException: String index out of range: -1
  6. 0

    Error when local realignment is turned off:

    GitHub | 1 year ago | ltfang-bina
    java.lang.StringIndexOutOfBoundsException: String index out of range: 101

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Root Cause Analysis

  1. java.lang.StringIndexOutOfBoundsException

    String index out of range: 1

    at java.lang.String.charAt()
  2. Java RT
    String.charAt
    1. java.lang.String.charAt(String.java:658)
    1 frame
  3. com.astrazeneca.vardict
    Main.main
    1. com.astrazeneca.vardict.VarDict.parseSAM(VarDict.java:2221)
    2. com.astrazeneca.vardict.VarDict.toVars(VarDict.java:2552)
    3. com.astrazeneca.vardict.VarDict.vardictNotParallel(VarDict.java:301)
    4. com.astrazeneca.vardict.VarDict.nonAmpVardict(VarDict.java:254)
    5. com.astrazeneca.vardict.VarDict.start(VarDict.java:65)
    6. com.astrazeneca.vardict.Main.run(Main.java:134)
    7. com.astrazeneca.vardict.Main.main(Main.java:25)
    7 frames