java.lang.StringIndexOutOfBoundsException: String index out of range: 24

GitHub | max-l | 4 months ago
  1. 0

    Getting StringIndexOutOfBoundsException with PeptideShakerCLI

    GitHub | 4 months ago | max-l
    java.lang.StringIndexOutOfBoundsException: String index out of range: 24
  2. 0

    GitHub comment 105#168058782

    GitHub | 11 months ago | uhaifabioinfo
    java.lang.StringIndexOutOfBoundsException: String index out of range: -1
  3. 0

    Bug Ensure Constraint Operation

    GitHub | 2 years ago | wbombardellis
    java.lang.StringIndexOutOfBoundsException: String index out of range: 24
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  5. 0

    java.lang.StringIndexOutOfBoundsException-urgen... | Oracle Community

    oracle.com | 8 months ago
    java.lang.StringIndexOutOfBoundsException: String index out of range: 24
  6. 0

    need help parsing and large file reading-urgent please

    Oracle Community | 1 decade ago | 807569
    java.lang.StringIndexOutOfBoundsException: String index out of range: 24

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Root Cause Analysis

  1. java.lang.StringIndexOutOfBoundsException

    String index out of range: 24

    at java.lang.String.substring()
  2. Java RT
    String.substring
    1. java.lang.String.substring(String.java:1907)
    1 frame
  3. com.compomics.util
    PTMFactory.getExpectedPTMs
    1. com.compomics.util.experiment.biology.Protein.isNTerm(Protein.java:257)
    2. com.compomics.util.experiment.biology.Peptide.isNterm(Peptide.java:639)
    3. com.compomics.util.experiment.biology.Peptide.getPotentialModificationSites(Peptide.java:911)
    4. com.compomics.util.experiment.biology.PTMFactory.getExpectedPTMs(PTMFactory.java:404)
    4 frames
  4. eu.isas.peptideshaker
    PsmImporter$PsmImporterRunnable.run
    1. eu.isas.peptideshaker.fileimport.PsmImporter.importAssumptions(PsmImporter.java:589)
    2. eu.isas.peptideshaker.fileimport.PsmImporter.importPsm(PsmImporter.java:422)
    3. eu.isas.peptideshaker.fileimport.PsmImporter.access$000(PsmImporter.java:68)
    4. eu.isas.peptideshaker.fileimport.PsmImporter$PsmImporterRunnable.run(PsmImporter.java:1473)
    4 frames
  5. Java RT
    Thread.run
    1. java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
    2. java.util.concurrent.FutureTask.run(FutureTask.java:262)
    3. java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
    4. java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
    5. java.lang.Thread.run(Thread.java:745)
    5 frames