java.lang.RuntimeException: BBMap terminated in an error state; the output may be corrupt.

seqanswers.com | 4 months ago
  1. 0

    BBMap (aligner for DNA/RNAseq) is now open-source and available for download. - Page 3 - SEQanswers

    seqanswers.com | 1 year ago
    java.lang.RuntimeException: BBMap terminated in an error state; the output may be corrupt.
  2. 0

    BBMap (aligner for DNA/RNAseq) is now open-source and available for download. [Archive] - SEQanswers

    seqanswers.com | 4 months ago
    java.lang.RuntimeException: BBMap terminated in an error state; the output may be corrupt.
  3. 0

    BBMap (aligner for DNA/RNAseq) is now open-source and available for download. - Page 7 - SEQanswers

    seqanswers.com | 5 days ago
    java.lang.RuntimeException: BBMap terminated in an error state; the output may be corrupt.
  4. Speed up your debug routine!

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    BBMap (aligner for DNA/RNAseq) is now open-source and available for download. [Archive] - SEQanswers

    seqanswers.com | 4 months ago
    java.lang.RuntimeException: BBMap terminated in an error state; the output may be corrupt.
  6. 0

    Exception is: org.gradle.api.tasks.TaskExecutionException: Execution failed for task :app:compileDebugJavaWithJavac

    Stack Overflow | 12 months ago | angel
    java.lang.RuntimeException: java.lang.ClassCastException: com.sun.tools.javac.code.Type cannot be cast to javax.lang.model.type.DeclaredType Possible causes for this unexpected error include:<ul><li>Gradle's dependency cache may be corrupt (this sometimes occurs after a network connection timeout.) <a href="syncProject">Re-download dependencies and sync project (requires network)</a></li><li>The state of a Gradle build process (daemon) may be corrupt. Stopping all Gradle daemons may solve this problem. <a href="stopGradleDaemons">Stop Gradle build processes (requires restart)</a></li><li>Your project may be using a third-party plugin which is not compatible with the other plugins in the project or the version of Gradle requested by the project.</li></ul>In the case of corrupt Gradle processes, you can also try closing the IDE and then killing all Java processes.

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    Root Cause Analysis

    1. java.lang.RuntimeException

      BBMap terminated in an error state; the output may be corrupt.

      at align2.BBMapPacBio.testSpeed()
    2. align2
      BBMapPacBio.main
      1. align2.BBMapPacBio.testSpeed(BBMapPacBio.java:407)
      2. align2.BBMapPacBio.main(BBMapPacBio.java:33)
      2 frames