java.lang.AssertionError: Read 28626, length 629, exceeds the limit of 600 You can map the reads in chunks by reformatting to fasta, then mapping with the setting 'fastareadlen=600'

seqanswers.com | 6 months ago
tip
Click on the to mark the solution that helps you, Samebug will learn from it.
As a community member, you’ll be rewarded for you help.
  1. 0

    BBMap (aligner for DNA/RNAseq) is now open-source and available for download. [Archive] - SEQanswers

    seqanswers.com | 6 months ago
    java.lang.AssertionError: Read 28626, length 629, exceeds the limit of 600 You can map the reads in chunks by reformatting to fasta, then mapping with the setting 'fastareadlen=600'
  2. 0

    BBMap (aligner for DNA/RNAseq) is now open-source and available for download. - Page 7 - SEQanswers

    seqanswers.com | 3 months ago
    java.lang.AssertionError: Read 40793, length 695, exceeds the limit of 600 You can map the reads in chunks by reformatting to fasta, then mapping with the setting 'fastareadlen=600'

    Root Cause Analysis

    1. java.lang.AssertionError

      Read 28626, length 629, exceeds the limit of 600 You can map the reads in chunks by reformatting to fasta, then mapping with the setting 'fastareadlen=600'

      at align2.AbstractMapThread.run()
    2. align2
      AbstractMapThread.run
      1. align2.AbstractMapThread.run(AbstractMapThread.java:313)
      1 frame