java.lang.RuntimeException: java.lang.OutOfMemoryError: Java heap space

seqanswers.com | 6 months ago
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  1. 0

    BBMap (aligner for DNA/RNAseq) is now open-source and available for download. [Archive] - SEQanswers

    seqanswers.com | 6 months ago
    java.lang.RuntimeException: java.lang.OutOfMemoryError: Java heap space
  2. 0

    BBMap (aligner for DNA/RNAseq) is now open-source and available for download. - Page 3 - SEQanswers

    seqanswers.com | 1 year ago
    java.lang.RuntimeException: BBMap terminated in an error state; the output may be corrupt.

    Root Cause Analysis

    1. java.lang.RuntimeException

      java.lang.OutOfMemoryError: Java heap space

      at align2.MultiStateAligner9PacBio.<init>()
    2. align2
      BBMapPacBio.main
      1. align2.MultiStateAligner9PacBio.<init>(MultiStateAligner9PacBio.java:73)
      2. align2.MSA.makeMSA(MSA.java:43)
      3. align2.AbstractMapThread.<init>(AbstractMapThread.java:130)
      4. align2.BBMapThreadPacBio.<init>(BBMapThreadPacBio.java:100)
      5. align2.BBMapPacBio.testSpeed(BBMapPacBio.java:378)
      6. align2.BBMapPacBio.main(BBMapPacBio.java:33)
      6 frames