java.lang.AssertionError: Read 17996, length 604, exceeds the limit of 600 You can map the reads in chunks by reformatting to fasta, then mapping with the setting 'fastareadlen=600'

seqanswers.com | 7 months ago
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  1. 0

    BBMap (aligner for DNA/RNAseq) is now open-source and available for download. [Archive] - SEQanswers

    seqanswers.com | 7 months ago
    java.lang.AssertionError: Read 17996, length 604, exceeds the limit of 600 You can map the reads in chunks by reformatting to fasta, then mapping with the setting 'fastareadlen=600'
  2. 0

    BBMap (aligner for DNA/RNAseq) is now open-source and available for download. - Page 7 - SEQanswers

    seqanswers.com | 3 months ago
    java.lang.AssertionError: Read 8202, length 621, exceeds the limit of 600 You can map the reads in chunks by reformatting to fasta, then mapping with the setting 'fastareadlen=600'

    Root Cause Analysis

    1. java.lang.AssertionError

      Read 17996, length 604, exceeds the limit of 600 You can map the reads in chunks by reformatting to fasta, then mapping with the setting 'fastareadlen=600'

      at align2.AbstractMapThread.run()
    2. align2
      AbstractMapThread.run
      1. align2.AbstractMapThread.run(AbstractMapThread.java:284)
      1 frame