java.lang.AssertionError

Read 40488, length 923, exceeds the limit of 600 You can map the reads in chunks by reformatting to fasta, then mapping with the setting 'fastareadlen=600'

Solutions on the web3034

  • Read 40488, length 923, exceeds the limit of 600 You can map the reads in chunks by reformatting to fasta, then mapping with the setting 'fastareadlen=600'
  • Read 40488, length 923, exceeds the limit of 600 You can map the reads in chunks by reformatting to fasta, then mapping with the setting 'fastareadlen=600'
  • There appear to be different numbers of reads in the paired input files. The pairing may have been corrupted by an upstream process. It may be fixable by running repair.sh.
  • Stack trace

    • java.lang.AssertionError: Read 40488, length 923, exceeds the limit of 600 You can map the reads in chunks by reformatting to fasta, then mapping with the setting 'fastareadlen=600' at align2.AbstractMapThread.run(AbstractMapThread.java:284)

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