java.lang.OutOfMemoryError: unable to create new native thread

GitHub | cfhammill | 6 months ago
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    GitHub comment 97#240148902

    GitHub | 6 months ago | cfhammill
    java.lang.OutOfMemoryError: unable to create new native thread

    Root Cause Analysis

    1. java.lang.OutOfMemoryError

      unable to create new native thread

      at bpipe.Concurrency.execute()
    2. bpipe
      Pipeline.run
      1. bpipe.Concurrency.execute(Concurrency.groovy:281)
      2. bpipe.PipelineCategory.runAndWaitFor(PipelineCategory.groovy:553)
      3. bpipe.PipelineCategory$runAndWaitFor$1.callStatic(Unknown Source)
      4. bpipe.PipelineCategory.splitOnMap(PipelineCategory.groovy:539)
      5. bpipe.PipelineCategory$_splitOnFiles_closure8.doCall(PipelineCategory.groovy:449)
      6. bpipe.PipelineStage.invokeMethod(PipelineStage.groovy)
      7. bpipe.PipelineStage$_runBody_closure3$_closure9.doCall(PipelineStage.groovy:388)
      8. bpipe.PipelineStage$_runBody_closure3$_closure9.doCall(PipelineStage.groovy)
      9. bpipe.ParamsBinding.withLocalVariables(Runner.groovy:1001)
      10. bpipe.PipelineStage$_runBody_closure3.doCall(PipelineStage.groovy:387)
      11. bpipe.PipelineStage$_runBody_closure3.doCall(PipelineStage.groovy)
      12. bpipe.PipelineStage.runBody(PipelineStage.groovy:375)
      13. bpipe.PipelineStage.run(PipelineStage.groovy:248)
      14. bpipe.Pipeline.runSegment(Pipeline.groovy:538)
      15. bpipe.Pipeline.launchPipeline(Pipeline.groovy:661)
      16. bpipe.Pipeline$_execute_closure7.doCall(Pipeline.groovy:636)
      17. bpipe.Pipeline$_execute_closure7.doCall(Pipeline.groovy)
      18. bpipe.Pipeline.execute(Pipeline.groovy:621)
      19. bpipe.Pipeline.execute(Pipeline.groovy)
      20. bpipe.Pipeline.run(Pipeline.groovy:499)
      21. bpipe.Pipeline$run$0.callStatic(Unknown Source)
      22. bpipe.Pipeline.run(Pipeline.groovy:459)
      22 frames
    3. pipeline
      bpipe$run.call
      1. pipeline.bpipe.run(pipeline.bpipe.groovy:3)
      2. pipeline.bpipe$run.call(Unknown Source)
      2 frames
    4. bpipe
      Runner.main
      1. bpipe.Runner.main(Runner.groovy:414)
      1 frame