htsjdk.samtools.SAMException: Requesting earlier reference sequence: 0 < 8

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via GitHub by yfarjoun
, 1 year ago
Requesting earlier reference sequence: 0 < 8
via GitHub by tfenne
, 1 year ago
Requesting earlier reference sequence: 0 < 8
via broadinstitute.org by Unknown author, 7 months ago
via broadinstitute.org by Unknown author, 1 year ago
via GitHub by raphenya
, 10 months ago
Reference sequence (424) not found in ../../galaxy/tool-data/grch38/seq/grch38.fa
htsjdk.samtools.SAMException: Requesting earlier reference sequence: 0 < 8
at htsjdk.samtools.reference.ReferenceSequenceFileWalker.get(ReferenceSequenceFileWalker.java:82)
at picard.sam.AbstractAlignmentMerger.calculateMdAndNmTags(AbstractAlignmentMerger.java:596)
at picard.sam.AbstractAlignmentMerger.clipForOverlappingReads(AbstractAlignmentMerger.java:628)
at picard.sam.AbstractAlignmentMerger.transferAlignmentInfoToPairedRead(AbstractAlignmentMerger.java:580)
at picard.sam.AbstractAlignmentMerger.mergeAlignment(AbstractAlignmentMerger.java:390)
at picard.sam.SamAlignmentMerger.mergeAlignment(SamAlignmentMerger.java:152)
at picard.sam.MergeBamAlignment.doWork(MergeBamAlignment.java:266)
at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:208)
at picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:95)
at picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:105)

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