java.lang.IllegalArgumentException: This exception has no message.

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via broadinstitute.org by Unknown author, 2 years ago
via broadinstitute.org by Unknown author, 1 year ago
This exception has no message.
via broadinstitute.org by Unknown author, 1 year ago
This exception has no message.
via broadinstitute.org by Unknown author, 1 year ago
This exception has no message.
via broadinstitute.org by Unknown author, 1 year ago
This exception has no message.
via broadinstitute.org by Unknown author, 1 year ago
This exception has no message.
java.lang.IllegalArgumentException:
at java.nio.ByteBuffer.allocate(ByteBuffer.java:330)
at org.broadinstitute.gatk.utils.fasta.CachingIndexedFastaSequenceFile.getSubsequenceAt(CachingIndexedFastaSequenceFile.java:329)
at org.broadinstitute.gatk.tools.walkers.rnaseq.OverhangFixingManager$Splice.initialize(OverhangFixingManager.java:365)
at org.broadinstitute.gatk.tools.walkers.rnaseq.OverhangFixingManager.addSplicePosition(OverhangFixingManager.java:171)
at org.broadinstitute.gatk.tools.walkers.rnaseq.SplitNCigarReads.splitReadBasedOnCigar(SplitNCigarReads.java:280)
at org.broadinstitute.gatk.tools.walkers.rnaseq.SplitNCigarReads.splitNCigarRead(SplitNCigarReads.java:233)
at org.broadinstitute.gatk.tools.walkers.rnaseq.SplitNCigarReads.reduce(SplitNCigarReads.java:210)
at org.broadinstitute.gatk.tools.walkers.rnaseq.SplitNCigarReads.reduce(SplitNCigarReads.java:118)
at org.broadinstitute.gatk.engine.traversals.TraverseReadsNano$TraverseReadsReduce.apply(TraverseReadsNano.java:251)
at org.broadinstitute.gatk.engine.traversals.TraverseReadsNano$TraverseReadsReduce.apply(TraverseReadsNano.java:240)
at org.broadinstitute.gatk.utils.nanoScheduler.NanoScheduler.executeSingleThreaded(NanoScheduler.java:279)
at org.broadinstitute.gatk.utils.nanoScheduler.NanoScheduler.execute(NanoScheduler.java:245)
at org.broadinstitute.gatk.engine.traversals.TraverseReadsNano.traverse(TraverseReadsNano.java:102)
at org.broadinstitute.gatk.engine.traversals.TraverseReadsNano.traverse(TraverseReadsNano.java:56)
at org.broadinstitute.gatk.engine.executive.LinearMicroScheduler.execute(LinearMicroScheduler.java:108)
at org.broadinstitute.gatk.engine.GenomeAnalysisEngine.execute(GenomeAnalysisEngine.java:315)
at org.broadinstitute.gatk.engine.CommandLineExecutable.execute(CommandLineExecutable.java:121)
at org.broadinstitute.gatk.utils.commandline.CommandLineProgram.start(CommandLineProgram.java:248)
at org.broadinstitute.gatk.utils.commandline.CommandLineProgram.start(CommandLineProgram.java:155)
at org.broadinstitute.gatk.engine.CommandLineGATK.main(CommandLineGATK.java:106)

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